Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47579 * 2 1 4 4 N 1.46902 * 109.47071 * 119.99969 * 2 1 3 5 5 C 1.46899 * 111.00255 * 174.99669 * 4 2 1 6 6 C 1.50703 * 109.47107 * 293.95458 * 5 4 2 7 7 H 1.07996 * 119.99751 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99923 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00006 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47093 * 90.00088 * 10 8 6 12 12 H 1.48500 * 109.47049 * 210.00797 * 10 8 6 13 13 H 1.48504 * 109.47189 * 330.00185 * 10 8 6 14 14 C 1.46901 * 111.00040 * 298.95404 * 4 2 1 15 15 H 1.09002 * 112.84322 * 311.19333 * 14 4 2 16 16 C 1.53777 * 113.61849 * 82.49897 * 14 4 2 17 17 C 1.53774 * 87.08195 * 139.98068 * 16 14 4 18 18 C 1.53779 * 113.61534 * 180.02562 * 14 4 2 19 19 H 1.09005 * 113.61090 * 334.55820 * 18 14 4 20 20 O 1.42891 * 113.61893 * 105.46784 * 18 14 4 21 21 H 1.09003 * 109.46891 * 300.00262 * 1 2 3 22 22 H 1.09000 * 109.46458 * 59.99947 * 1 2 3 23 23 H 1.09000 * 109.47383 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47260 * 239.99458 * 2 1 3 25 25 H 1.09001 * 109.47226 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.46577 * 299.99633 * 3 2 1 27 27 H 1.08998 * 109.47267 * 59.99462 * 3 2 1 28 28 H 1.09002 * 109.47043 * 53.95437 * 5 4 2 29 29 H 1.09001 * 109.47354 * 173.95499 * 5 4 2 30 30 H 0.97000 * 119.99684 * 180.02562 * 9 8 6 31 31 H 1.08996 * 113.61632 * 254.53429 * 16 14 4 32 32 H 1.09000 * 113.61376 * 25.43447 * 16 14 4 33 33 H 1.09004 * 113.61812 * 220.01541 * 17 16 14 34 34 H 1.09005 * 113.61388 * 89.11716 * 17 16 14 35 35 H 0.96699 * 114.00231 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4832 -0.8166 1.1752 6 6 3.8916 -1.7255 0.0446 7 1 3.1392 -2.1672 -0.5919 8 6 5.2258 -1.9941 -0.1765 9 7 5.5822 -2.7869 -1.1634 10 14 6.5272 -1.2307 0.9249 11 1 6.7923 -2.1314 2.0754 12 1 7.7789 -1.0356 0.1501 13 1 6.0449 0.0818 1.4248 14 6 1.5692 -0.0121 2.4210 15 1 1.7490 1.0628 2.3974 16 6 0.1406 -0.3905 2.8458 17 6 0.6559 -0.3914 4.2946 18 6 2.0498 -0.6884 3.7158 19 1 2.2574 -1.7523 3.6015 20 8 3.1048 0.0169 4.3725 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9562 -0.8901 27 1 1.6768 1.9563 0.8899 28 1 3.9289 0.1674 1.0294 29 1 3.8281 -1.2352 2.1206 30 1 6.5208 -2.9761 -1.3187 31 1 -0.5954 0.3879 2.6447 32 1 -0.1739 -1.3729 2.4937 33 1 0.2528 -1.2026 4.9010 34 1 0.5847 0.5800 4.7841 35 1 3.4110 -0.4034 5.1878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704140831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = -22.248966 kcal Electronic energy + Delta-G solvation = -15344.966101 eV Core-core repulsion = 12957.969726 eV Total energy + Delta-G solvation = -2386.996375 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55954 -36.44679 -34.23928 -32.63069 -30.74176 -27.23860 -26.66028 -24.31442 -23.94382 -21.66337 -19.72733 -18.54865 -17.28137 -16.63510 -15.48355 -14.93966 -14.43805 -13.90994 -13.59433 -13.25129 -13.02102 -12.66231 -12.35598 -12.00089 -11.68405 -11.39896 -11.31763 -11.18297 -10.84175 -10.64230 -10.48599 -10.29262 -9.84890 -9.83482 -9.77503 -9.48513 -9.10988 -8.50796 -7.28025 -6.00381 -3.96596 3.33005 3.40241 3.47359 4.40626 4.47919 4.86043 4.92914 5.03542 5.20444 5.29174 5.34199 5.62043 5.74874 5.81964 5.90546 5.98186 6.01187 6.06994 6.13745 6.26466 6.31185 6.50016 6.54980 6.63410 6.74308 6.90555 7.10173 7.19249 7.69906 7.90690 8.02616 8.16770 8.72515 9.08233 9.62585 11.12668 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.012079 C = 0.009585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.169370 B = 2317.593077 C = 2920.561594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 C -0.183 4.183 4 N -0.511 5.511 5 C 0.161 3.839 6 C -0.506 4.506 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.903 5.903 10 Si 0.872 3.128 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.265 1.265 14 C 0.063 3.937 15 H 0.067 0.933 16 C -0.123 4.123 17 C -0.173 4.173 18 C 0.084 3.916 19 H 0.091 0.909 20 O -0.561 6.561 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.045 0.955 28 H -0.007 1.007 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 5.937 8.757 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 C -0.242 4.242 4 N -0.235 5.235 5 C 0.035 3.965 6 C -0.544 4.544 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.542 5.542 10 Si 0.700 3.300 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.190 1.190 14 C -0.046 4.046 15 H 0.085 0.915 16 C -0.161 4.161 17 C -0.212 4.212 18 C 0.025 3.975 19 H 0.108 0.892 20 O -0.366 6.366 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.011 0.989 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -9.262 5.783 8.149 13.624 hybrid contribution 1.312 0.773 0.986 1.814 sum -7.950 6.556 9.134 13.770 Atomic orbital electron populations 1.22041 0.96009 1.01730 1.00719 1.21565 0.93797 0.91909 0.95339 1.22427 1.02448 0.98744 1.00531 1.62491 1.14115 1.47543 0.99317 1.20167 0.82829 0.95755 0.97774 1.21069 0.92884 1.27319 1.13162 0.90252 1.24877 0.98347 0.94922 0.95157 1.69899 1.16891 1.36966 1.30447 0.86897 0.81511 0.80654 0.80986 1.20292 1.21401 1.19011 1.23270 0.94432 0.96996 0.89890 0.91550 1.22879 0.96057 1.02446 0.94682 1.23556 0.98262 1.01917 0.97438 1.23556 0.84582 0.96492 0.92886 0.89166 1.86551 1.55081 1.53129 1.41826 0.92723 0.93432 0.92313 0.88638 0.91920 0.93094 0.93556 0.98921 0.95600 0.92794 0.91390 0.89008 0.91449 0.90055 0.78271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.41 37.16 0.31 -1.97 16 2 C 0.08 1.59 2.80 -67.71 -0.19 1.40 16 3 C -0.18 -3.30 8.58 37.16 0.32 -2.98 16 4 N -0.51 -10.70 4.49 -219.18 -0.98 -11.69 16 5 C 0.16 3.99 3.49 -4.98 -0.02 3.97 16 6 C -0.51 -14.50 9.00 -34.44 -0.31 -14.81 16 7 H 0.08 2.46 7.38 -52.49 -0.39 2.07 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 10 Si 0.87 22.19 27.47 -169.99 -4.67 17.52 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 14 C 0.06 1.12 2.46 -66.90 -0.16 0.96 16 15 H 0.07 1.24 6.02 -51.93 -0.31 0.92 16 16 C -0.12 -1.74 5.71 -25.92 -0.15 -1.88 16 17 C -0.17 -2.26 7.91 -25.90 -0.20 -2.47 16 18 C 0.08 1.38 3.57 -25.90 -0.09 1.28 16 19 H 0.09 1.56 7.94 -51.93 -0.41 1.15 16 20 O -0.56 -9.29 13.64 -35.23 -0.48 -9.77 16 21 H 0.05 0.77 4.95 -51.93 -0.26 0.52 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.10 2.11 6.74 -51.93 -0.35 1.76 16 25 H 0.06 1.28 6.40 -51.93 -0.33 0.95 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.78 6.20 -51.93 -0.32 0.46 16 28 H -0.01 -0.18 5.23 -51.93 -0.27 -0.45 16 29 H 0.03 0.66 6.13 -51.93 -0.32 0.34 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.07 0.86 6.89 -51.93 -0.36 0.50 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.37 4.31 9.12 45.56 0.42 4.72 16 LS Contribution 267.87 15.07 4.04 4.04 Total: -1.00 -31.62 267.87 -6.52 -38.15 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.61 Total: 3.53 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.59 Total: -14.59 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.21 Total: -38.86 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.48 Total: -9.77 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.62 -6.52 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704140831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.900 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds