Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47579 * 2 1 4 4 N 1.46902 * 109.47071 * 119.99969 * 2 1 3 5 5 C 1.46899 * 111.00255 * 174.99669 * 4 2 1 6 6 C 1.50703 * 109.47107 * 293.95458 * 5 4 2 7 7 H 1.07996 * 119.99751 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99923 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00006 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47093 * 90.00088 * 10 8 6 12 12 H 1.48500 * 109.47049 * 210.00797 * 10 8 6 13 13 H 1.48504 * 109.47189 * 330.00185 * 10 8 6 14 14 C 1.46901 * 111.00040 * 298.95404 * 4 2 1 15 15 H 1.09002 * 112.84322 * 311.19333 * 14 4 2 16 16 C 1.53777 * 113.61849 * 82.49897 * 14 4 2 17 17 C 1.53774 * 87.08195 * 139.98068 * 16 14 4 18 18 C 1.53779 * 113.61534 * 180.02562 * 14 4 2 19 19 H 1.09005 * 113.61090 * 334.55820 * 18 14 4 20 20 O 1.42891 * 113.61893 * 105.46784 * 18 14 4 21 21 H 1.09003 * 109.46891 * 300.00262 * 1 2 3 22 22 H 1.09000 * 109.46458 * 59.99947 * 1 2 3 23 23 H 1.09000 * 109.47383 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47260 * 239.99458 * 2 1 3 25 25 H 1.09001 * 109.47226 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.46577 * 299.99633 * 3 2 1 27 27 H 1.08998 * 109.47267 * 59.99462 * 3 2 1 28 28 H 1.09002 * 109.47043 * 53.95437 * 5 4 2 29 29 H 1.09001 * 109.47354 * 173.95499 * 5 4 2 30 30 H 0.97000 * 119.99684 * 180.02562 * 9 8 6 31 31 H 1.08996 * 113.61632 * 254.53429 * 16 14 4 32 32 H 1.09000 * 113.61376 * 25.43447 * 16 14 4 33 33 H 1.09004 * 113.61812 * 220.01541 * 17 16 14 34 34 H 1.09005 * 113.61388 * 89.11716 * 17 16 14 35 35 H 0.96699 * 114.00231 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4832 -0.8166 1.1752 6 6 3.8916 -1.7255 0.0446 7 1 3.1392 -2.1672 -0.5919 8 6 5.2258 -1.9941 -0.1765 9 7 5.5822 -2.7869 -1.1634 10 14 6.5272 -1.2307 0.9249 11 1 6.7923 -2.1314 2.0754 12 1 7.7789 -1.0356 0.1501 13 1 6.0449 0.0818 1.4248 14 6 1.5692 -0.0121 2.4210 15 1 1.7490 1.0628 2.3974 16 6 0.1406 -0.3905 2.8458 17 6 0.6559 -0.3914 4.2946 18 6 2.0498 -0.6884 3.7158 19 1 2.2574 -1.7523 3.6015 20 8 3.1048 0.0169 4.3725 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9562 -0.8901 27 1 1.6768 1.9563 0.8899 28 1 3.9289 0.1674 1.0294 29 1 3.8281 -1.2352 2.1206 30 1 6.5208 -2.9761 -1.3187 31 1 -0.5954 0.3879 2.6447 32 1 -0.1739 -1.3729 2.4937 33 1 0.2528 -1.2026 4.9010 34 1 0.5847 0.5800 4.7841 35 1 3.4110 -0.4034 5.1878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704140831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = -47.072579 kcal Electronic energy + Delta-G solvation = -15346.042534 eV Core-core repulsion = 12957.969726 eV Total energy + Delta-G solvation = -2388.072808 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90927 -37.88787 -35.55915 -34.73352 -32.48690 -29.07548 -28.11294 -25.56794 -25.29627 -23.61193 -21.10265 -19.97681 -18.81243 -18.54796 -17.01241 -16.41694 -16.32823 -15.46760 -15.11350 -14.72072 -14.45173 -14.40422 -13.97583 -13.39320 -13.26564 -12.93427 -12.85931 -12.51132 -12.38718 -12.25726 -12.04967 -11.86444 -11.71574 -11.54007 -11.28503 -10.93310 -10.76518 -10.68321 -8.95109 -8.29567 -6.30731 1.29946 1.31654 1.44300 2.32090 3.02891 3.13757 3.51529 3.70428 3.84595 3.96516 4.05775 4.22014 4.32402 4.53630 4.55123 4.73329 4.81356 4.83076 4.91388 4.98610 5.00571 5.05863 5.07369 5.21123 5.29399 5.44063 5.49815 5.50662 5.62522 6.03874 6.45385 6.71270 6.76192 6.93225 7.32680 8.86949 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.012079 C = 0.009585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.169370 B = 2317.593077 C = 2920.561594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.076 3.924 3 C -0.175 4.175 4 N -0.522 5.522 5 C 0.177 3.823 6 C -0.509 4.509 7 H 0.040 0.960 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.941 3.059 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.262 1.262 14 C 0.047 3.953 15 H 0.061 0.939 16 C -0.111 4.111 17 C -0.149 4.149 18 C 0.074 3.926 19 H 0.074 0.926 20 O -0.581 6.581 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.063 0.937 28 H -0.019 1.019 29 H 0.022 0.978 30 H 0.266 0.734 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 7.297 10.816 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 C -0.233 4.233 4 N -0.246 5.246 5 C 0.050 3.950 6 C -0.548 4.548 7 H 0.058 0.942 8 C -0.186 4.186 9 N -0.588 5.588 10 Si 0.765 3.235 11 H -0.189 1.189 12 H -0.206 1.206 13 H -0.186 1.186 14 C -0.062 4.062 15 H 0.079 0.921 16 C -0.149 4.149 17 C -0.187 4.187 18 C 0.015 3.985 19 H 0.092 0.908 20 O -0.389 6.389 21 H 0.093 0.907 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.082 0.918 28 H -0.002 1.002 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -10.499 7.140 10.228 16.304 hybrid contribution 1.646 0.322 0.293 1.703 sum -8.853 7.462 10.521 15.644 Atomic orbital electron populations 1.21938 0.92500 1.02137 1.02687 1.21591 0.96548 0.91928 0.93173 1.22334 1.00268 0.98272 1.02437 1.62433 1.11332 1.49307 1.01480 1.19807 0.85797 0.93787 0.95583 1.21282 0.92297 1.27463 1.13718 0.94222 1.25737 1.00769 0.95442 0.96647 1.70039 1.17644 1.38690 1.32388 0.85805 0.78521 0.79898 0.79264 1.18894 1.20585 1.18597 1.23557 0.97376 0.96479 0.88773 0.92139 1.22842 0.94107 1.02897 0.95061 1.23425 0.94935 1.03380 0.96975 1.23605 0.86544 0.95382 0.92990 0.90778 1.86492 1.55512 1.53684 1.43176 0.90659 0.91488 0.92717 0.92908 0.95146 0.90897 0.91843 1.00177 0.95960 0.92498 0.89042 0.89383 0.89187 0.88763 0.75981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.41 71.98 0.61 -3.32 16 2 C 0.08 2.95 2.80 44.91 0.13 3.08 16 3 C -0.17 -6.19 8.58 71.98 0.62 -5.57 16 4 N -0.52 -21.94 4.49 -847.34 -3.80 -25.74 16 5 C 0.18 8.97 3.49 85.56 0.30 9.27 16 6 C -0.51 -30.38 9.00 25.60 0.23 -30.15 16 7 H 0.04 2.62 7.38 -2.91 -0.02 2.59 16 8 C 0.01 0.68 5.47 84.65 0.46 1.14 16 9 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 10 Si 0.94 46.46 27.47 68.60 1.88 48.34 16 11 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 13 H -0.26 -12.66 6.54 99.48 0.65 -12.01 16 14 C 0.05 1.58 2.46 45.44 0.11 1.69 16 15 H 0.06 2.13 6.02 -2.39 -0.01 2.11 16 16 C -0.11 -2.77 5.71 31.12 0.18 -2.60 16 17 C -0.15 -3.32 7.91 31.13 0.25 -3.07 16 18 C 0.07 2.28 3.57 31.13 0.11 2.39 16 19 H 0.07 2.50 7.94 -2.38 -0.02 2.48 16 20 O -0.58 -18.09 13.64 -148.98 -2.03 -20.12 16 21 H 0.07 1.87 4.95 -2.39 -0.01 1.86 16 22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 2.46 6.74 -2.39 -0.02 2.45 16 25 H 0.03 1.24 6.40 -2.39 -0.02 1.23 16 26 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.06 2.01 6.20 -2.39 -0.01 2.00 16 28 H -0.02 -1.02 5.23 -2.39 -0.01 -1.03 16 29 H 0.02 1.14 6.13 -2.39 -0.01 1.13 16 30 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.09 1.87 6.89 -2.39 -0.02 1.86 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.39 8.24 9.12 -74.06 -0.68 7.56 16 Total: -1.00 -70.31 267.87 -0.32 -70.63 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.35 Total: 14.15 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 2.99 Total: -27.15 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -3.50 Total: -85.85 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -2.03 Total: -20.12 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.88 Total: 48.34 kcal Total: -70.31 -0.32 -70.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704140831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.553 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds