Wall clock time and date at job start Mon Mar 30 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46964 * 2 1 4 4 N 1.46902 * 109.47097 * 119.99822 * 2 1 3 5 5 C 1.46899 * 110.99691 * 175.00296 * 4 2 1 6 6 C 1.50703 * 109.47180 * 293.95248 * 5 4 2 7 7 H 1.07994 * 119.99603 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99838 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00380 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99848 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47261 * 239.99776 * 10 8 6 13 13 H 1.48500 * 109.47454 * 119.99769 * 10 8 6 14 14 C 1.46904 * 111.00069 * 298.95366 * 4 2 1 15 15 H 1.08995 * 112.84742 * 311.20134 * 14 4 2 16 16 C 1.53779 * 113.61078 * 82.50246 * 14 4 2 17 17 C 1.53775 * 87.08079 * 139.98045 * 16 14 4 18 18 C 1.53772 * 113.61297 * 179.97438 * 14 4 2 19 19 H 1.08998 * 113.61198 * 105.39030 * 18 14 4 20 20 O 1.42898 * 113.61896 * 334.57057 * 18 14 4 21 21 H 1.09002 * 109.47500 * 299.99986 * 1 2 3 22 22 H 1.09003 * 109.47487 * 60.00123 * 1 2 3 23 23 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47439 * 240.00534 * 2 1 3 25 25 H 1.08995 * 109.46777 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.46590 * 300.00033 * 3 2 1 27 27 H 1.09002 * 109.47001 * 59.99708 * 3 2 1 28 28 H 1.09005 * 109.47198 * 173.95445 * 5 4 2 29 29 H 1.08998 * 109.47329 * 53.95392 * 5 4 2 30 30 H 0.97001 * 119.99667 * 0.02562 * 9 8 6 31 31 H 1.09005 * 113.61709 * 254.53051 * 16 14 4 32 32 H 1.09006 * 113.61528 * 25.43055 * 16 14 4 33 33 H 1.09000 * 113.62102 * 220.01676 * 17 16 14 34 34 H 1.09008 * 113.68911 * 89.12807 * 17 16 14 35 35 H 0.96695 * 114.00435 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4832 -0.8163 1.1751 6 6 3.8917 -1.7252 0.0446 7 1 3.1393 -2.1663 -0.5924 8 6 5.2258 -1.9936 -0.1765 9 7 6.1421 -1.4561 0.5988 10 14 5.7322 -3.1196 -1.5783 11 1 4.5211 -3.5911 -2.2968 12 1 6.4699 -4.2876 -1.0333 13 1 6.6082 -2.3760 -2.5190 14 6 1.5691 -0.0120 2.4210 15 1 1.7487 1.0628 2.3974 16 6 0.1405 -0.3906 2.8458 17 6 0.6558 -0.3915 4.2946 18 6 2.0487 -0.6890 3.7157 19 1 2.8546 -0.1524 4.2164 20 8 2.3202 -2.0839 3.5658 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 3.8282 -1.2350 2.1206 29 1 3.9288 0.1677 1.0294 30 1 5.8791 -0.8710 1.3265 31 1 -0.5956 0.3878 2.6446 32 1 -0.1739 -1.3731 2.4935 33 1 0.2528 -1.2026 4.9010 34 1 0.5848 0.5793 4.7853 35 1 2.6226 -2.5152 4.3766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704140834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:28 Heat of formation + Delta-G solvation = -22.148064 kcal Electronic energy + Delta-G solvation = -15431.428703 eV Core-core repulsion = 13044.436703 eV Total energy + Delta-G solvation = -2386.992000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53164 -36.31971 -33.93475 -32.84060 -30.32333 -26.88698 -26.05785 -24.42634 -23.72369 -22.16941 -19.72693 -18.61893 -16.72875 -16.41613 -15.51707 -14.76515 -14.57964 -13.68006 -13.47986 -13.33497 -12.87916 -12.69438 -12.20083 -11.78399 -11.53084 -11.44593 -11.10427 -10.86374 -10.77629 -10.63105 -10.40665 -10.19950 -10.04660 -9.80011 -9.55504 -9.26727 -8.47878 -8.21561 -7.07504 -6.23529 -3.88920 3.50585 3.55011 3.68964 4.47210 4.63845 4.88932 4.93364 5.13260 5.25299 5.44041 5.52850 5.64148 5.74324 5.85601 5.87033 5.97484 6.04328 6.09333 6.17362 6.29631 6.32410 6.53289 6.60716 6.68411 6.81361 6.96400 7.29725 7.36938 7.98131 8.18398 8.26726 8.53135 8.76516 9.03544 9.79981 11.15856 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031482 B = 0.010709 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.192472 B = 2614.021969 C = 3089.007366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.080 3.920 3 C -0.182 4.182 4 N -0.497 5.497 5 C 0.182 3.818 6 C -0.575 4.575 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.922 5.922 10 Si 1.075 2.925 11 H -0.289 1.289 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.058 3.942 15 H 0.064 0.936 16 C -0.116 4.116 17 C -0.179 4.179 18 C 0.092 3.908 19 H 0.053 0.947 20 O -0.516 6.516 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.034 0.966 29 H -0.024 1.024 30 H 0.265 0.735 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.244 3.763 4.949 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 C -0.241 4.241 4 N -0.221 5.221 5 C 0.057 3.943 6 C -0.614 4.614 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.559 5.559 10 Si 0.904 3.096 11 H -0.216 1.216 12 H -0.215 1.215 13 H -0.217 1.217 14 C -0.051 4.051 15 H 0.081 0.919 16 C -0.154 4.154 17 C -0.217 4.217 18 C 0.032 3.968 19 H 0.071 0.929 20 O -0.318 6.318 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.052 0.948 29 H -0.006 1.006 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.316 2.714 3.561 10.336 hybrid contribution -0.762 1.538 1.395 2.212 sum -10.078 4.252 4.956 12.009 Atomic orbital electron populations 1.22033 0.96239 1.01604 1.00525 1.21583 0.93663 0.91751 0.95898 1.22427 1.02458 0.98910 1.00297 1.62447 1.14679 1.46625 0.98324 1.19870 0.81480 0.94533 0.98464 1.22019 0.94138 1.30240 1.14953 0.92791 1.25751 0.92861 0.98943 1.01596 1.70729 1.35841 1.31070 1.18276 0.83465 0.75105 0.75879 0.75150 1.21550 1.21505 1.21674 1.23267 0.95545 0.95410 0.90916 0.91878 1.23013 0.95977 1.02057 0.94335 1.23549 0.99063 1.01495 0.97612 1.22670 0.93772 0.83799 0.96542 0.92931 1.86819 1.88584 1.19825 1.36567 0.92742 0.93674 0.92461 0.89260 0.91908 0.93304 0.93744 0.94783 1.00646 0.92465 0.92382 0.89067 0.91179 0.90308 0.79103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.41 37.16 0.31 -2.10 16 2 C 0.08 1.61 2.80 -67.71 -0.19 1.43 16 3 C -0.18 -3.38 8.59 37.16 0.32 -3.06 16 4 N -0.50 -11.06 4.17 -219.18 -0.91 -11.98 16 5 C 0.18 4.82 3.54 -4.98 -0.02 4.80 16 6 C -0.57 -16.81 8.44 -34.44 -0.29 -17.11 16 7 H 0.05 1.61 7.13 -52.49 -0.37 1.23 16 8 C 0.01 0.32 5.46 -17.82 -0.10 0.23 16 9 N -0.92 -28.75 13.65 55.43 0.76 -28.00 16 10 Si 1.07 26.36 29.90 -169.99 -5.08 21.28 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.06 1.07 2.58 -66.90 -0.17 0.90 16 15 H 0.06 1.14 6.02 -51.93 -0.31 0.83 16 16 C -0.12 -1.80 5.65 -25.92 -0.15 -1.95 16 17 C -0.18 -2.45 7.91 -25.94 -0.21 -2.65 16 18 C 0.09 1.58 4.22 -25.94 -0.11 1.47 16 19 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 20 O -0.52 -9.79 11.76 -35.23 -0.41 -10.21 16 21 H 0.05 0.83 4.94 -51.93 -0.26 0.57 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.09 2.04 6.74 -51.93 -0.35 1.69 16 25 H 0.06 1.34 6.40 -51.93 -0.33 1.00 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.75 6.20 -51.93 -0.32 0.43 16 28 H 0.03 0.96 5.81 -51.93 -0.30 0.66 16 29 H -0.02 -0.67 6.04 -51.93 -0.31 -0.98 16 30 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 31 H 0.06 0.79 6.89 -51.93 -0.36 0.43 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.36 5.08 9.12 45.56 0.42 5.50 16 LS Contribution 267.92 15.07 4.04 4.04 Total: -1.00 -32.58 267.92 -6.77 -39.35 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.56 Total: 3.56 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -0.60 Total: -18.04 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.16 Total: -39.97 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.41 Total: -10.21 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.08 Total: 21.28 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.58 -6.77 -39.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704140834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.203 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds