Wall clock time and date at job start Mon Mar 30 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46964 * 2 1 4 4 N 1.46902 * 109.47097 * 119.99822 * 2 1 3 5 5 C 1.46899 * 110.99691 * 175.00296 * 4 2 1 6 6 C 1.50703 * 109.47180 * 293.95248 * 5 4 2 7 7 H 1.07994 * 119.99603 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99838 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00380 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99848 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47261 * 239.99776 * 10 8 6 13 13 H 1.48500 * 109.47454 * 119.99769 * 10 8 6 14 14 C 1.46904 * 111.00069 * 298.95366 * 4 2 1 15 15 H 1.08995 * 112.84742 * 311.20134 * 14 4 2 16 16 C 1.53779 * 113.61078 * 82.50246 * 14 4 2 17 17 C 1.53775 * 87.08079 * 139.98045 * 16 14 4 18 18 C 1.53772 * 113.61297 * 179.97438 * 14 4 2 19 19 H 1.08998 * 113.61198 * 105.39030 * 18 14 4 20 20 O 1.42898 * 113.61896 * 334.57057 * 18 14 4 21 21 H 1.09002 * 109.47500 * 299.99986 * 1 2 3 22 22 H 1.09003 * 109.47487 * 60.00123 * 1 2 3 23 23 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47439 * 240.00534 * 2 1 3 25 25 H 1.08995 * 109.46777 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.46590 * 300.00033 * 3 2 1 27 27 H 1.09002 * 109.47001 * 59.99708 * 3 2 1 28 28 H 1.09005 * 109.47198 * 173.95445 * 5 4 2 29 29 H 1.08998 * 109.47329 * 53.95392 * 5 4 2 30 30 H 0.97001 * 119.99667 * 0.02562 * 9 8 6 31 31 H 1.09005 * 113.61709 * 254.53051 * 16 14 4 32 32 H 1.09006 * 113.61528 * 25.43055 * 16 14 4 33 33 H 1.09000 * 113.62102 * 220.01676 * 17 16 14 34 34 H 1.09008 * 113.68911 * 89.12807 * 17 16 14 35 35 H 0.96695 * 114.00435 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4832 -0.8163 1.1751 6 6 3.8917 -1.7252 0.0446 7 1 3.1393 -2.1663 -0.5924 8 6 5.2258 -1.9936 -0.1765 9 7 6.1421 -1.4561 0.5988 10 14 5.7322 -3.1196 -1.5783 11 1 4.5211 -3.5911 -2.2968 12 1 6.4699 -4.2876 -1.0333 13 1 6.6082 -2.3760 -2.5190 14 6 1.5691 -0.0120 2.4210 15 1 1.7487 1.0628 2.3974 16 6 0.1405 -0.3906 2.8458 17 6 0.6558 -0.3915 4.2946 18 6 2.0487 -0.6890 3.7157 19 1 2.8546 -0.1524 4.2164 20 8 2.3202 -2.0839 3.5658 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 3.8282 -1.2350 2.1206 29 1 3.9288 0.1677 1.0294 30 1 5.8791 -0.8710 1.3265 31 1 -0.5956 0.3878 2.6446 32 1 -0.1739 -1.3731 2.4935 33 1 0.2528 -1.2026 4.9010 34 1 0.5848 0.5793 4.7853 35 1 2.6226 -2.5152 4.3766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704140834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:26 Heat of formation + Delta-G solvation = -46.823127 kcal Electronic energy + Delta-G solvation = -15432.498694 eV Core-core repulsion = 13044.436703 eV Total energy + Delta-G solvation = -2388.061991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96263 -37.88697 -35.52956 -34.82609 -32.06806 -28.42721 -27.93046 -25.75445 -25.26971 -24.20004 -21.18630 -20.14156 -18.63602 -18.06149 -17.06408 -16.31646 -16.11116 -15.63066 -15.09224 -14.91429 -14.58374 -14.06823 -13.77333 -13.30921 -13.19284 -13.10923 -12.76782 -12.54434 -12.40456 -12.19076 -12.04920 -11.93661 -11.60824 -11.41741 -11.02891 -10.68302 -10.53321 -10.43155 -8.86273 -8.61114 -6.28829 1.50120 1.60377 1.77363 2.56488 3.12529 3.20020 3.45205 3.68170 3.83023 3.90512 4.10144 4.21564 4.29455 4.43643 4.50663 4.68895 4.75221 4.81042 4.84623 4.95332 4.96552 5.02956 5.16376 5.19777 5.28958 5.43170 5.48090 5.51486 5.93431 6.13067 6.52547 6.59108 6.80555 7.03599 7.49275 8.76545 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031482 B = 0.010709 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.192472 B = 2614.021969 C = 3089.007366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 C -0.172 4.172 4 N -0.509 5.509 5 C 0.199 3.801 6 C -0.585 4.585 7 H 0.042 0.958 8 C -0.040 4.040 9 N -0.942 5.942 10 Si 1.122 2.878 11 H -0.275 1.275 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.039 3.961 15 H 0.069 0.931 16 C -0.105 4.105 17 C -0.152 4.152 18 C 0.077 3.923 19 H 0.051 0.949 20 O -0.549 6.549 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.013 0.987 29 H -0.048 1.048 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 4.192 5.149 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.036 4.036 3 C -0.230 4.230 4 N -0.233 5.233 5 C 0.073 3.927 6 C -0.624 4.624 7 H 0.061 0.939 8 C -0.237 4.237 9 N -0.581 5.581 10 Si 0.944 3.056 11 H -0.200 1.200 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.070 4.070 15 H 0.087 0.913 16 C -0.143 4.143 17 C -0.190 4.190 18 C 0.018 3.982 19 H 0.069 0.931 20 O -0.354 6.354 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.031 0.969 29 H -0.031 1.031 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.238 3.154 3.787 12.271 hybrid contribution -0.195 1.434 1.364 1.989 sum -11.432 4.588 5.151 13.353 Atomic orbital electron populations 1.21916 0.92701 1.01826 1.02619 1.21645 0.96381 0.91900 0.93691 1.22308 0.99869 0.98416 1.02450 1.62353 1.11505 1.48671 1.00750 1.19471 0.84592 0.92394 0.96273 1.22319 0.94164 1.30382 1.15533 0.93921 1.27275 0.93250 0.99789 1.03360 1.70863 1.36243 1.32112 1.18853 0.82872 0.75641 0.74463 0.72648 1.19969 1.20439 1.20403 1.23592 0.98180 0.95610 0.89632 0.91332 1.22905 0.94360 1.01822 0.95229 1.23442 0.95350 1.03435 0.96773 1.22871 0.96040 0.82903 0.96433 0.93084 1.86739 1.89007 1.21046 1.38615 0.90876 0.91281 0.93196 0.92983 0.95730 0.90818 0.91811 0.96900 1.03073 0.93936 0.89632 0.90870 0.89714 0.87498 0.77049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.41 71.98 0.61 -3.47 16 2 C 0.07 2.92 2.80 44.92 0.13 3.05 16 3 C -0.17 -6.29 8.59 71.99 0.62 -5.67 16 4 N -0.51 -22.94 4.17 -847.35 -3.53 -26.48 16 5 C 0.20 10.99 3.54 85.56 0.30 11.30 16 6 C -0.59 -35.40 8.44 25.60 0.22 -35.19 16 7 H 0.04 2.62 7.13 -2.91 -0.02 2.60 16 8 C -0.04 -2.45 5.46 84.65 0.46 -1.98 16 9 N -0.94 -60.40 13.65 21.45 0.29 -60.11 16 10 Si 1.12 53.39 29.90 68.60 2.05 55.45 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.04 1.38 2.58 45.44 0.12 1.50 16 15 H 0.07 2.37 6.02 -2.39 -0.01 2.35 16 16 C -0.11 -2.96 5.65 31.12 0.18 -2.79 16 17 C -0.15 -3.65 7.91 31.11 0.25 -3.40 16 18 C 0.08 2.58 4.22 31.10 0.13 2.71 16 19 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 20 O -0.55 -20.96 11.76 -148.98 -1.75 -22.71 16 21 H 0.07 1.95 4.94 -2.39 -0.01 1.94 16 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 2.45 6.74 -2.39 -0.02 2.43 16 25 H 0.02 1.06 6.40 -2.39 -0.02 1.04 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.06 6.20 -2.39 -0.01 2.04 16 28 H 0.01 0.77 5.81 -2.38 -0.01 0.75 16 29 H -0.05 -2.83 6.04 -2.39 -0.01 -2.85 16 30 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 31 H 0.09 1.94 6.89 -2.38 -0.02 1.92 16 32 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.38 10.71 9.12 -74.06 -0.68 10.04 16 Total: -1.00 -72.55 267.92 0.56 -71.99 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.50 Total: 15.80 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.00 Total: -33.94 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -3.24 Total: -86.58 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -1.75 Total: -22.71 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 2.05 Total: 55.45 kcal Total: -72.55 0.56 -71.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704140834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.168 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds