Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46792 * 2 1 4 4 N 1.46894 * 109.47019 * 240.00318 * 2 1 3 5 5 C 1.46903 * 111.00062 * 176.82990 * 4 2 1 6 6 C 1.50700 * 109.47196 * 282.11532 * 5 4 2 7 7 H 1.08003 * 119.99945 * 355.82278 * 6 5 4 8 8 C 1.37870 * 120.00444 * 175.82713 * 6 5 4 9 9 N 1.31523 * 119.99688 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00607 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47211 * 59.99605 * 10 8 6 12 12 H 1.48493 * 109.47509 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46960 * 300.00147 * 10 8 6 14 14 C 1.46903 * 111.00012 * 300.78179 * 4 2 1 15 15 H 1.09005 * 112.84624 * 34.39154 * 14 4 2 16 16 C 1.53782 * 113.61616 * 263.08663 * 14 4 2 17 17 C 1.53770 * 87.08204 * 220.01576 * 16 14 4 18 18 C 1.53782 * 87.08392 * 25.43476 * 17 16 14 19 19 H 1.09001 * 113.69030 * 220.01213 * 18 17 16 20 20 O 1.42900 * 113.61707 * 89.10943 * 18 17 16 21 21 H 1.09001 * 109.47514 * 59.99789 * 1 2 3 22 22 H 1.09006 * 109.46990 * 299.99994 * 1 2 3 23 23 H 1.08999 * 109.46835 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47246 * 119.99763 * 2 1 3 25 25 H 1.08998 * 109.47096 * 53.81644 * 3 2 1 26 26 H 1.08997 * 109.46700 * 173.81595 * 3 2 1 27 27 H 1.09001 * 109.46833 * 293.81346 * 3 2 1 28 28 H 1.09004 * 109.47322 * 42.11377 * 5 4 2 29 29 H 1.09000 * 109.47248 * 162.11817 * 5 4 2 30 30 H 0.96997 * 119.99689 * 180.02562 * 9 8 6 31 31 H 1.09009 * 113.61334 * 334.56968 * 16 14 4 32 32 H 1.09004 * 113.61196 * 105.46201 * 16 14 4 33 33 H 1.08995 * 113.62191 * 270.88208 * 17 16 14 34 34 H 1.09007 * 113.61132 * 139.97940 * 17 16 14 35 35 H 0.96703 * 113.99806 * 82.50475 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 3.4861 -0.6467 -1.2719 6 6 3.9230 0.7115 -1.7572 7 1 3.1849 1.4425 -2.0528 8 6 5.2648 1.0210 -1.8239 9 7 6.1637 0.1311 -1.4635 10 14 5.8064 2.7043 -2.4260 11 1 5.2400 3.7528 -1.5401 12 1 7.2890 2.7846 -2.4038 13 1 5.3207 2.9135 -3.8136 14 6 1.5333 -2.0779 -1.2428 15 1 0.5324 -2.1884 -0.8256 16 6 2.5445 -3.1029 -0.7027 17 6 2.1083 -4.0231 -1.8549 18 6 1.7060 -2.7487 -2.6158 19 1 0.7748 -2.8473 -3.1738 20 8 2.7644 -2.1901 -3.3967 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 0.8900 25 1 1.5890 1.9873 0.8294 26 1 3.1242 1.4446 0.1107 27 1 1.7698 1.9234 -0.9402 28 1 3.9048 -0.8310 -0.2825 29 1 3.8397 -1.4108 -1.9642 30 1 7.1077 0.3490 -1.5101 31 1 3.5812 -2.7736 -0.7752 32 1 2.2901 -3.4887 0.2846 33 1 1.2650 -4.6667 -1.6045 34 1 2.9334 -4.5654 -2.3169 35 1 2.8780 -2.6079 -4.2614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704140837.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = -33.829161 kcal Electronic energy + Delta-G solvation = -15506.725595 eV Core-core repulsion = 13119.227065 eV Total energy + Delta-G solvation = -2387.498530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = -0.01 seconds Orbital eigenvalues (eV) -40.93748 -37.67960 -35.25334 -34.61115 -31.89258 -29.55200 -27.17316 -25.97094 -25.02898 -23.76303 -21.03760 -19.88558 -18.64535 -17.84451 -16.71380 -16.38120 -16.15111 -15.67375 -15.55797 -14.29233 -14.13250 -13.80326 -13.75236 -13.21597 -13.12261 -12.84975 -12.79031 -12.59442 -12.40567 -12.10499 -11.94153 -11.85170 -11.70787 -11.16275 -11.01677 -10.76208 -10.46549 -10.32740 -8.75510 -8.03887 -6.04853 1.40958 1.43994 1.51009 2.47549 3.26111 3.34145 3.42369 3.79992 3.87507 4.10998 4.22801 4.31192 4.38778 4.56534 4.64057 4.77210 4.90417 4.95726 5.01383 5.09335 5.13223 5.18569 5.22959 5.40044 5.45190 5.59302 5.71846 5.78003 5.87095 6.31904 6.65918 6.83424 7.06313 7.22998 7.56481 9.06312 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028509 B = 0.012093 C = 0.009620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.902550 B = 2314.813790 C = 2909.961228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.077 3.923 3 C -0.130 4.130 4 N -0.520 5.520 5 C 0.214 3.786 6 C -0.486 4.486 7 H 0.061 0.939 8 C -0.007 4.007 9 N -0.942 5.942 10 Si 0.954 3.046 11 H -0.269 1.269 12 H -0.288 1.288 13 H -0.272 1.272 14 C 0.053 3.947 15 H 0.129 0.871 16 C -0.182 4.182 17 C -0.152 4.152 18 C 0.087 3.913 19 H 0.086 0.914 20 O -0.548 6.548 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.009 0.991 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.047 0.953 28 H -0.056 1.056 29 H 0.045 0.955 30 H 0.257 0.743 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 -5.560 0.041 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.032 4.032 3 C -0.188 4.188 4 N -0.243 5.243 5 C 0.088 3.912 6 C -0.525 4.525 7 H 0.079 0.921 8 C -0.202 4.202 9 N -0.585 5.585 10 Si 0.780 3.220 11 H -0.194 1.194 12 H -0.214 1.214 13 H -0.197 1.197 14 C -0.057 4.057 15 H 0.146 0.854 16 C -0.221 4.221 17 C -0.190 4.190 18 C 0.027 3.973 19 H 0.103 0.897 20 O -0.354 6.354 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.027 0.973 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.066 0.934 28 H -0.039 1.039 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.629 -4.915 0.169 12.626 hybrid contribution 1.328 -0.010 0.089 1.331 sum -10.301 -4.925 0.259 11.420 Atomic orbital electron populations 1.21845 0.92649 1.02130 1.02289 1.21583 0.96290 0.95035 0.90266 1.21948 1.01192 0.95367 1.00265 1.62064 1.12074 1.12945 1.37250 1.19530 0.82248 0.96977 0.92431 1.21593 0.91250 0.99830 1.39848 0.92135 1.25751 0.96983 1.00621 0.96882 1.70106 1.00927 1.36227 1.51242 0.85668 0.76666 0.80590 0.79102 1.19436 1.21399 1.19737 1.23751 0.98935 0.87220 0.95776 0.85403 1.23587 1.00210 0.99369 0.98973 1.23422 1.02173 0.96547 0.96904 1.23023 0.90137 0.92403 0.91785 0.89675 1.86907 1.54029 1.62046 1.32427 0.92340 0.91054 0.91687 0.97270 0.92435 0.93644 0.93359 1.03861 0.93739 0.93479 0.92773 0.91612 0.86663 0.91460 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.06 71.98 0.65 -3.17 16 2 C 0.08 3.02 2.57 44.92 0.12 3.14 16 3 C -0.13 -5.47 7.74 71.98 0.56 -4.91 16 4 N -0.52 -22.98 4.34 -847.32 -3.68 -26.66 16 5 C 0.21 11.73 2.56 85.56 0.22 11.95 16 6 C -0.49 -28.37 6.39 25.60 0.16 -28.21 16 7 H 0.06 3.50 5.96 -2.91 -0.02 3.48 16 8 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 9 N -0.94 -59.36 13.29 21.45 0.28 -59.08 16 10 Si 0.95 46.49 29.54 68.60 2.03 48.52 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.05 1.86 3.71 45.44 0.17 2.03 16 15 H 0.13 3.68 5.71 -2.38 -0.01 3.66 16 16 C -0.18 -6.59 7.12 31.12 0.22 -6.37 16 17 C -0.15 -4.21 7.91 31.12 0.25 -3.97 16 18 C 0.09 2.74 5.21 31.12 0.16 2.90 16 19 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 20 O -0.55 -21.40 10.42 -148.98 -1.55 -22.95 16 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.06 1.63 6.02 -2.39 -0.01 1.61 16 24 H 0.01 0.39 8.13 -2.39 -0.02 0.37 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 2.27 5.90 -2.39 -0.01 2.26 16 27 H 0.05 2.08 6.94 -2.39 -0.02 2.07 16 28 H -0.06 -3.48 7.56 -2.39 -0.02 -3.50 16 29 H 0.04 2.63 4.30 -2.39 -0.01 2.62 16 30 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.05 2.52 5.50 -2.38 -0.01 2.50 16 32 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.38 10.72 9.12 -74.06 -0.68 10.05 16 Total: -1.00 -70.79 267.08 0.45 -70.34 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.40 Total: 16.38 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 2.97 Total: -26.55 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -3.39 Total: -85.74 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -1.55 Total: -22.95 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.79 0.45 -70.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704140837.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.510 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.01 seconds