Wall clock time and date at job start Mon Mar 30 2020 04:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 115.56138 * 2 1 4 4 C 1.53004 * 117.49631 * 214.31431 * 2 1 3 5 5 C 1.53002 * 117.49787 * 145.69306 * 2 1 3 6 6 C 1.52998 * 117.49921 * 359.97438 * 5 2 1 7 7 N 1.46892 * 117.49811 * 214.97899 * 5 2 1 8 8 C 1.46898 * 111.00071 * 180.02562 * 7 5 2 9 9 C 1.52997 * 109.47386 * 180.02562 * 8 7 5 10 10 O 1.42905 * 109.47264 * 64.99761 * 9 8 7 11 11 C 1.42901 * 114.00134 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.46955 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00200 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99959 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00060 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00128 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47468 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47062 * 120.00238 * 16 14 12 19 19 H 1.48498 * 109.47402 * 240.00108 * 16 14 12 20 20 H 1.08993 * 109.47532 * 274.30511 * 1 2 3 21 21 H 1.08998 * 109.47391 * 34.30583 * 1 2 3 22 22 H 1.09006 * 109.47279 * 154.30380 * 1 2 3 23 23 H 1.09001 * 117.49345 * 145.02114 * 4 2 1 24 24 H 1.08997 * 117.50179 * 0.02562 * 4 2 1 25 25 H 1.08998 * 109.46898 * 299.91463 * 6 5 2 26 26 H 1.09002 * 109.47165 * 59.91265 * 6 5 2 27 27 H 1.08994 * 109.47400 * 179.91310 * 6 5 2 28 28 H 1.00895 * 111.00237 * 56.04623 * 7 5 2 29 29 H 1.09004 * 109.47607 * 59.99875 * 8 7 5 30 30 H 1.09002 * 109.46852 * 300.00126 * 8 7 5 31 31 H 1.09001 * 109.47289 * 304.99594 * 9 8 7 32 32 H 1.09004 * 109.47261 * 184.99850 * 9 8 7 33 33 H 1.08994 * 109.47036 * 300.00109 * 11 10 9 34 34 H 1.09002 * 109.46796 * 60.00253 * 11 10 9 35 35 H 0.97007 * 120.00409 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7649 6 6 1.3588 -2.1559 1.4718 7 7 3.4966 -0.7898 1.4432 8 6 4.0500 -1.9651 2.1291 9 6 5.3587 -1.5816 2.8227 10 8 5.0896 -0.6323 3.8565 11 6 6.2513 -0.2062 4.5712 12 6 5.8526 0.7885 5.6307 13 1 4.8156 1.0670 5.7470 14 6 6.8114 1.3421 6.4523 15 7 8.0740 1.0026 6.3110 16 14 6.3170 2.5745 7.7661 17 1 4.8477 2.7848 7.7199 18 1 6.7002 2.0534 9.1029 19 1 7.0101 3.8647 7.5205 20 1 -0.3634 0.0771 1.0247 21 1 -0.3634 0.8489 -0.5792 22 1 -0.3634 -0.9261 -0.4456 23 1 3.1715 -0.8751 -1.2684 24 1 1.6112 -1.8582 -1.2688 25 1 0.7310 -1.6566 2.2097 26 1 0.7280 -2.6589 0.7388 27 1 1.9921 -2.8896 1.9704 28 1 3.3706 -0.0220 2.0855 29 1 4.2415 -2.7538 1.4015 30 1 3.3364 -2.3216 2.8720 31 1 6.0406 -1.1422 2.0946 32 1 5.8145 -2.4717 3.2564 33 1 6.7252 -1.0679 5.0411 34 1 6.9521 0.2615 3.8795 35 1 8.7488 1.3924 6.8888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704269982.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:18 Heat of formation + Delta-G solvation = -35.041684 kcal Electronic energy + Delta-G solvation = -14112.029559 eV Core-core repulsion = 11724.478450 eV Total energy + Delta-G solvation = -2387.551109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.88204 -36.79054 -33.86399 -32.57106 -29.20384 -28.09606 -27.62280 -26.41792 -22.38712 -21.84015 -20.64200 -18.92172 -16.52949 -16.16389 -15.66693 -15.13892 -14.52480 -14.21054 -13.97381 -13.55122 -13.31548 -12.92716 -12.70955 -12.34024 -11.98682 -11.76830 -11.58219 -11.37753 -11.16304 -10.80628 -10.74299 -10.59783 -10.10251 -9.91472 -9.55094 -9.08628 -8.81700 -8.16765 -8.14898 -6.10450 -4.12178 3.29286 3.35705 3.41961 3.75389 4.17409 4.35541 4.76746 4.84878 4.94016 5.11138 5.26126 5.27025 5.41315 5.55589 5.61989 5.71806 5.73378 5.79115 5.85436 5.92413 6.00618 6.09720 6.15980 6.26229 6.32464 6.39907 7.12380 7.31827 7.44934 7.67690 7.79758 8.15994 8.58503 9.01333 9.52775 11.01147 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041914 B = 0.005469 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.866375 B = 5118.879504 C = 5496.071448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.149 4.149 3 H 0.107 0.893 4 C -0.160 4.160 5 C 0.039 3.961 6 C -0.144 4.144 7 N -0.651 5.651 8 C 0.066 3.934 9 C 0.061 3.939 10 O -0.399 6.399 11 C 0.197 3.803 12 C -0.514 4.514 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.282 1.282 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.357 0.643 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.004 0.996 34 H 0.006 0.994 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 -5.095 -11.343 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.168 4.168 3 H 0.125 0.875 4 C -0.198 4.198 5 C -0.053 4.053 6 C -0.203 4.203 7 N -0.283 5.283 8 C -0.063 4.063 9 C -0.017 4.017 10 O -0.319 6.319 11 C 0.122 3.878 12 C -0.552 4.552 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.208 1.208 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.115 0.885 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.178 0.822 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.535 -5.069 -11.760 17.235 hybrid contribution -0.258 0.452 1.393 1.487 sum -11.793 -4.618 -10.368 16.367 Atomic orbital electron populations 1.21345 0.93092 1.01572 1.01733 1.22520 0.94664 0.95042 1.04552 0.87511 1.23302 1.02110 1.00627 0.93781 1.21584 0.91591 0.99142 0.93006 1.21810 0.99296 0.98572 1.00578 1.60362 1.23587 1.08955 1.35409 1.22017 0.95674 0.92847 0.95779 1.22320 0.95668 0.92959 0.90755 1.87788 1.36027 1.60062 1.48047 1.20182 0.83004 0.94095 0.90490 1.21092 0.94776 1.23828 1.15510 0.91586 1.24947 0.94690 0.97118 0.97756 1.69976 1.00432 1.43900 1.39452 0.86291 0.78791 0.80568 0.80900 1.19521 1.20863 1.20817 0.92293 0.92309 0.92718 0.88502 0.89297 0.92199 0.92240 0.91316 0.82199 0.90681 0.94086 0.93634 0.94103 0.97815 0.97624 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.21 37.16 0.34 -0.79 16 2 C -0.15 -1.72 6.34 -90.62 -0.57 -2.30 16 3 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.16 -1.83 9.75 -26.73 -0.26 -2.09 16 5 C 0.04 0.50 2.80 -131.60 -0.37 0.13 16 6 C -0.14 -1.65 8.50 37.16 0.32 -1.34 16 7 N -0.65 -10.22 6.71 -99.97 -0.67 -10.89 16 8 C 0.07 1.03 5.12 -3.83 -0.02 1.01 16 9 C 0.06 1.16 6.28 37.16 0.23 1.40 16 10 O -0.40 -9.65 9.85 -35.23 -0.35 -10.00 16 11 C 0.20 5.46 5.69 36.01 0.20 5.67 16 12 C -0.51 -15.25 9.43 -34.44 -0.32 -15.57 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 16 Si 0.91 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H 0.06 0.56 8.02 -51.93 -0.42 0.15 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.47 7.77 -51.93 -0.40 0.07 16 23 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.09 0.88 7.96 -51.93 -0.41 0.46 16 25 H 0.06 0.69 8.02 -51.93 -0.42 0.27 16 26 H 0.06 0.58 7.77 -51.93 -0.40 0.18 16 27 H 0.07 0.81 5.61 -51.93 -0.29 0.52 16 28 H 0.36 6.22 8.37 -39.29 -0.33 5.89 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.64 6.35 -51.93 -0.33 0.31 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -30.54 290.41 -7.40 -37.94 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.93 Total: 0.36 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.55 Total: -12.35 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.07 Total: -37.27 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.35 Total: -10.00 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.54 -7.40 -37.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269982.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.902 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds