Wall clock time and date at job start Mon Mar 30 2020 04:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.56241 * 2 1 4 4 C 1.53004 * 117.49539 * 145.68332 * 2 1 3 5 5 C 1.53003 * 117.49702 * 214.30533 * 2 1 3 6 6 C 1.52994 * 117.52053 * 359.97438 * 5 2 1 7 7 N 1.46902 * 117.49377 * 145.02394 * 5 2 1 8 8 C 1.46906 * 110.99573 * 180.02562 * 7 5 2 9 9 C 1.52998 * 109.47020 * 179.97438 * 8 7 5 10 10 O 1.42906 * 109.47024 * 64.99964 * 9 8 7 11 11 C 1.42895 * 114.00010 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47575 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99318 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00352 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99801 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99781 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47304 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47249 * 120.00100 * 16 14 12 19 19 H 1.48500 * 109.47114 * 239.99862 * 16 14 12 20 20 H 1.08996 * 109.47697 * 205.69064 * 1 2 3 21 21 H 1.09003 * 109.47201 * 325.69556 * 1 2 3 22 22 H 1.08997 * 109.47049 * 85.69008 * 1 2 3 23 23 H 1.08994 * 117.49932 * 0.02562 * 4 2 1 24 24 H 1.09000 * 117.51786 * 214.96838 * 4 2 1 25 25 H 1.09000 * 109.47639 * 180.11418 * 6 5 2 26 26 H 1.08997 * 109.47493 * 300.12349 * 6 5 2 27 27 H 1.09007 * 109.46731 * 60.11742 * 6 5 2 28 28 H 1.00896 * 111.00219 * 303.96978 * 7 5 2 29 29 H 1.09002 * 109.46991 * 299.99841 * 8 7 5 30 30 H 1.09000 * 109.47202 * 60.00133 * 8 7 5 31 31 H 1.08999 * 109.47322 * 185.00065 * 9 8 7 32 32 H 1.09001 * 109.47293 * 305.00104 * 9 8 7 33 33 H 1.09005 * 109.47322 * 300.00292 * 11 10 9 34 34 H 1.09002 * 109.47410 * 59.99743 * 11 10 9 35 35 H 0.97002 * 119.99491 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7652 5 6 2.2364 -1.1211 -0.7649 6 6 1.3593 -2.1569 -1.4709 7 7 3.4967 -0.7898 -1.4432 8 6 4.0494 -1.9648 -2.1301 9 6 5.3582 -1.5813 -2.8236 10 8 6.3320 -1.2255 -1.8400 11 6 7.5981 -0.8492 -2.3852 12 6 8.5427 -0.4969 -1.2651 13 1 8.2095 -0.5550 -0.2394 14 6 9.8325 -0.1014 -1.5496 15 7 10.2383 -0.0312 -2.7986 16 14 11.0035 0.3345 -0.1611 17 1 10.3084 0.1744 1.1413 18 1 12.1827 -0.5671 -0.2065 19 1 11.4507 1.7423 -0.3143 20 1 -0.3634 -0.9260 0.4455 21 1 -0.3634 0.8489 0.5792 22 1 -0.3633 0.0772 -1.0247 23 1 1.6112 -1.8586 1.2681 24 1 3.1716 -0.8755 1.2684 25 1 1.9929 -2.8907 -1.9691 26 1 0.7287 -2.6595 -0.7375 27 1 0.7311 -1.6583 -2.2092 28 1 3.3707 -0.0217 -2.0852 29 1 4.2408 -2.7541 -1.4031 30 1 3.3357 -2.3205 -2.8731 31 1 5.7224 -2.4276 -3.4059 32 1 5.1837 -0.7330 -3.4855 33 1 8.0086 -1.6807 -2.9582 34 1 7.4704 0.0141 -3.0383 35 1 11.1459 0.2467 -2.9988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704269986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:20 Heat of formation + Delta-G solvation = -31.231591 kcal Electronic energy + Delta-G solvation = -14092.428693 eV Core-core repulsion = 11705.042802 eV Total energy + Delta-G solvation = -2387.385891 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.88589 -36.69741 -33.91569 -32.53054 -29.21900 -28.13945 -27.61915 -26.33808 -22.30107 -21.88500 -20.64933 -18.97817 -16.48598 -16.13966 -15.74419 -14.89691 -14.52085 -14.26217 -13.90466 -13.56245 -13.31669 -12.90985 -12.78506 -12.47160 -12.00555 -11.70427 -11.58992 -11.29288 -11.21761 -10.77128 -10.73123 -10.43905 -10.07920 -9.87196 -9.56791 -9.01522 -8.75455 -8.12656 -8.06742 -6.05491 -4.06139 3.33128 3.39317 3.46810 3.75317 4.13898 4.40505 4.76659 4.84776 4.92372 5.03522 5.25287 5.31144 5.40622 5.57094 5.60058 5.67558 5.73168 5.76522 5.82727 5.88741 5.99156 6.07477 6.14320 6.17882 6.37649 6.38140 7.16324 7.31503 7.49632 7.60403 7.87034 8.23043 8.68115 9.09199 9.58669 11.06342 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045287 B = 0.005396 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.135229 B = 5187.606343 C = 5592.779590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.150 4.150 3 H 0.107 0.893 4 C -0.156 4.156 5 C 0.036 3.964 6 C -0.144 4.144 7 N -0.639 5.639 8 C 0.065 3.935 9 C 0.064 3.936 10 O -0.380 6.380 11 C 0.193 3.807 12 C -0.509 4.509 13 H 0.067 0.933 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.340 0.660 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.002 0.998 34 H 0.003 0.997 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.902 -2.403 1.969 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.169 4.169 3 H 0.125 0.875 4 C -0.194 4.194 5 C -0.056 4.056 6 C -0.203 4.203 7 N -0.269 5.269 8 C -0.063 4.063 9 C -0.014 4.014 10 O -0.300 6.300 11 C 0.118 3.882 12 C -0.547 4.547 13 H 0.085 0.915 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.107 0.893 24 H 0.120 0.880 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.159 0.841 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.020 0.980 34 H 0.021 0.979 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.370 -2.445 2.613 17.735 hybrid contribution 0.283 0.208 -0.538 0.643 sum -17.087 -2.237 2.075 17.357 Atomic orbital electron populations 1.21345 0.93180 1.01681 1.01466 1.22528 0.94456 0.95101 1.04801 0.87506 1.23311 1.02279 1.00182 0.93618 1.21590 0.91275 0.99103 0.93600 1.21816 0.99229 0.98584 1.00638 1.60240 1.23460 1.08128 1.35095 1.22057 0.93925 0.93494 0.96863 1.22263 0.89562 0.97883 0.91720 1.87964 1.22811 1.87471 1.31713 1.20192 0.79178 0.93749 0.95061 1.21115 0.95418 1.44507 0.93702 0.91469 1.24948 0.97979 0.95614 0.96059 1.69981 1.18148 1.48237 1.17690 0.86294 0.80342 0.77932 0.82016 1.19454 1.20909 1.20889 0.92679 0.92293 0.92535 0.89297 0.88009 0.91377 0.92065 0.92500 0.84093 0.90332 0.94281 0.94155 0.94833 0.98006 0.97908 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.22 37.16 0.34 -0.72 16 2 C -0.15 -1.72 6.34 -90.62 -0.57 -2.30 16 3 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.16 -1.97 9.75 -26.73 -0.26 -2.23 16 5 C 0.04 0.46 2.80 -131.60 -0.37 0.10 16 6 C -0.14 -1.52 8.50 37.15 0.32 -1.20 16 7 N -0.64 -9.94 6.66 -99.96 -0.67 -10.60 16 8 C 0.07 1.02 5.08 -3.82 -0.02 1.00 16 9 C 0.06 1.22 6.22 37.16 0.23 1.45 16 10 O -0.38 -9.56 10.27 -35.23 -0.36 -9.92 16 11 C 0.19 5.47 5.69 36.01 0.20 5.67 16 12 C -0.51 -15.47 9.43 -34.44 -0.32 -15.80 16 13 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 16 Si 0.91 22.36 29.54 -169.99 -5.02 17.34 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H 0.05 0.46 7.77 -51.93 -0.40 0.05 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.48 8.03 -51.93 -0.42 0.06 16 23 H 0.09 0.97 7.96 -51.93 -0.41 0.55 16 24 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 25 H 0.07 0.73 5.61 -51.93 -0.29 0.44 16 26 H 0.06 0.58 7.77 -51.93 -0.40 0.17 16 27 H 0.06 0.54 8.03 -51.92 -0.42 0.13 16 28 H 0.34 5.00 8.81 -39.29 -0.35 4.65 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.50 6.35 -51.93 -0.33 0.17 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 291.14 15.07 4.39 4.39 Total: -1.00 -32.00 291.14 -7.42 -39.43 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.95 Total: -1.33 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.55 Total: -12.51 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.07 Total: -37.39 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.36 Total: -9.92 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.00 -7.42 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.195 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds