Wall clock time and date at job start Mon Mar 30 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.56241 * 2 1 4 4 C 1.53004 * 117.49539 * 145.68332 * 2 1 3 5 5 C 1.53003 * 117.49702 * 214.30533 * 2 1 3 6 6 C 1.52994 * 117.52053 * 359.97438 * 5 2 1 7 7 N 1.46902 * 117.49377 * 145.02394 * 5 2 1 8 8 C 1.46906 * 110.99573 * 180.02562 * 7 5 2 9 9 C 1.52998 * 109.47020 * 179.97438 * 8 7 5 10 10 O 1.42906 * 109.47024 * 64.99964 * 9 8 7 11 11 C 1.42895 * 114.00010 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47575 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99318 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00352 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99801 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99781 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47304 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47249 * 120.00100 * 16 14 12 19 19 H 1.48500 * 109.47114 * 239.99862 * 16 14 12 20 20 H 1.08996 * 109.47697 * 205.69064 * 1 2 3 21 21 H 1.09003 * 109.47201 * 325.69556 * 1 2 3 22 22 H 1.08997 * 109.47049 * 85.69008 * 1 2 3 23 23 H 1.08994 * 117.49932 * 0.02562 * 4 2 1 24 24 H 1.09000 * 117.51786 * 214.96838 * 4 2 1 25 25 H 1.09000 * 109.47639 * 180.11418 * 6 5 2 26 26 H 1.08997 * 109.47493 * 300.12349 * 6 5 2 27 27 H 1.09007 * 109.46731 * 60.11742 * 6 5 2 28 28 H 1.00896 * 111.00219 * 303.96978 * 7 5 2 29 29 H 1.09002 * 109.46991 * 299.99841 * 8 7 5 30 30 H 1.09000 * 109.47202 * 60.00133 * 8 7 5 31 31 H 1.08999 * 109.47322 * 185.00065 * 9 8 7 32 32 H 1.09001 * 109.47293 * 305.00104 * 9 8 7 33 33 H 1.09005 * 109.47322 * 300.00292 * 11 10 9 34 34 H 1.09002 * 109.47410 * 59.99743 * 11 10 9 35 35 H 0.97002 * 119.99491 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7652 5 6 2.2364 -1.1211 -0.7649 6 6 1.3593 -2.1569 -1.4709 7 7 3.4967 -0.7898 -1.4432 8 6 4.0494 -1.9648 -2.1301 9 6 5.3582 -1.5813 -2.8236 10 8 6.3320 -1.2255 -1.8400 11 6 7.5981 -0.8492 -2.3852 12 6 8.5427 -0.4969 -1.2651 13 1 8.2095 -0.5550 -0.2394 14 6 9.8325 -0.1014 -1.5496 15 7 10.2383 -0.0312 -2.7986 16 14 11.0035 0.3345 -0.1611 17 1 10.3084 0.1744 1.1413 18 1 12.1827 -0.5671 -0.2065 19 1 11.4507 1.7423 -0.3143 20 1 -0.3634 -0.9260 0.4455 21 1 -0.3634 0.8489 0.5792 22 1 -0.3633 0.0772 -1.0247 23 1 1.6112 -1.8586 1.2681 24 1 3.1716 -0.8755 1.2684 25 1 1.9929 -2.8907 -1.9691 26 1 0.7287 -2.6595 -0.7375 27 1 0.7311 -1.6583 -2.2092 28 1 3.3707 -0.0217 -2.0852 29 1 4.2408 -2.7541 -1.4031 30 1 3.3357 -2.3205 -2.8731 31 1 5.7224 -2.4276 -3.4059 32 1 5.1837 -0.7330 -3.4855 33 1 8.0086 -1.6807 -2.9582 34 1 7.4704 0.0141 -3.0383 35 1 11.1459 0.2467 -2.9988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704269986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:19 Heat of formation + Delta-G solvation = -53.412423 kcal Electronic energy + Delta-G solvation = -14093.390526 eV Core-core repulsion = 11705.042802 eV Total energy + Delta-G solvation = -2388.347724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91932 -38.50847 -35.39431 -34.60094 -30.50068 -29.29922 -28.89599 -27.97624 -24.49894 -23.25835 -21.68965 -19.96836 -18.64679 -17.53299 -17.36002 -16.56476 -16.36647 -15.59930 -15.21209 -14.84680 -14.45594 -14.23647 -14.03044 -13.62487 -13.26802 -13.06139 -12.95429 -12.77806 -12.62104 -12.52680 -12.27221 -12.15704 -11.79452 -11.25619 -10.95731 -10.87125 -10.50533 -10.19436 -9.23163 -8.32492 -6.44452 1.39200 1.40877 1.55939 2.35138 2.80537 3.01088 3.04432 3.23747 3.86619 3.95120 4.08004 4.24350 4.28830 4.44728 4.49868 4.56421 4.64243 4.81842 4.82681 4.90676 4.97437 4.99838 5.04053 5.09068 5.17116 5.19145 5.29286 5.48706 5.55331 5.97126 6.19750 6.45838 6.57300 6.86147 7.28003 8.80214 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045287 B = 0.005396 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.135229 B = 5187.606343 C = 5592.779590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.140 4.140 3 H 0.093 0.907 4 C -0.168 4.168 5 C 0.027 3.973 6 C -0.138 4.138 7 N -0.666 5.666 8 C 0.078 3.922 9 C 0.053 3.947 10 O -0.398 6.398 11 C 0.208 3.792 12 C -0.547 4.547 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.984 3.016 17 H -0.266 1.266 18 H -0.269 1.269 19 H -0.270 1.270 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.108 0.892 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.342 0.658 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.040 0.960 33 H -0.015 1.015 34 H -0.016 1.016 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.898 -2.528 2.520 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.159 4.159 3 H 0.111 0.889 4 C -0.206 4.206 5 C -0.065 4.065 6 C -0.197 4.197 7 N -0.297 5.297 8 C -0.051 4.051 9 C -0.024 4.024 10 O -0.318 6.318 11 C 0.132 3.868 12 C -0.584 4.584 13 H 0.076 0.924 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.806 3.194 17 H -0.191 1.191 18 H -0.194 1.194 19 H -0.195 1.195 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.127 0.873 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.003 0.997 34 H 0.001 0.999 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.393 -2.579 3.152 18.838 hybrid contribution 0.540 0.248 -0.754 0.960 sum -17.852 -2.332 2.397 18.163 Atomic orbital electron populations 1.21344 0.90751 1.02670 1.02365 1.22578 0.96139 0.93926 1.03209 0.88895 1.23330 1.01784 1.01666 0.93780 1.21770 0.90775 1.00583 0.93348 1.21783 0.99000 0.97821 1.01048 1.60158 1.25715 1.08314 1.35514 1.21936 0.92638 0.93225 0.97269 1.22644 0.89792 0.98459 0.91512 1.87920 1.22471 1.87580 1.33799 1.19815 0.80611 0.92200 0.94141 1.21409 0.96916 1.46404 0.93700 0.92412 1.25954 0.99500 0.94603 0.99097 1.70076 1.19088 1.48024 1.19861 0.85134 0.77735 0.78300 0.78209 1.19067 1.19440 1.19512 0.91645 0.91404 0.91610 0.87336 0.90842 0.91669 0.90620 0.91205 0.83883 0.91384 0.90657 0.93203 0.94194 0.99749 0.99854 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.22 71.98 0.66 -1.07 16 2 C -0.14 -3.04 6.34 -10.79 -0.07 -3.11 16 3 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.17 -4.13 9.75 30.60 0.30 -3.83 16 5 C 0.03 0.65 2.80 3.53 0.01 0.66 16 6 C -0.14 -2.53 8.50 71.98 0.61 -1.92 16 7 N -0.67 -20.49 6.66 -470.16 -3.13 -23.62 16 8 C 0.08 2.37 5.08 86.30 0.44 2.81 16 9 C 0.05 2.04 6.22 71.98 0.45 2.49 16 10 O -0.40 -20.56 10.27 -148.98 -1.53 -22.09 16 11 C 0.21 12.18 5.69 71.24 0.41 12.58 16 12 C -0.55 -33.96 9.43 25.60 0.24 -33.72 16 13 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 14 C 0.01 0.40 5.46 84.65 0.46 0.86 16 15 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 16 Si 0.98 45.68 29.54 68.60 2.03 47.71 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H 0.06 0.88 7.77 -2.39 -0.02 0.86 16 21 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.90 8.03 -2.39 -0.02 0.89 16 23 H 0.11 2.18 7.96 -2.39 -0.02 2.16 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.06 1.23 5.61 -2.39 -0.01 1.22 16 26 H 0.07 1.18 7.77 -2.39 -0.02 1.16 16 27 H 0.07 1.11 8.03 -2.38 -0.02 1.09 16 28 H 0.34 9.98 8.81 -89.70 -0.79 9.19 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 1.77 6.35 -2.39 -0.02 1.75 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 34 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -69.15 291.14 1.42 -67.73 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.26 Total: 11.43 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.51 Total: -24.25 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.84 Total: -80.53 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -1.53 Total: -22.09 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -69.15 1.42 -67.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.320 kcal (2) G-P(sol) polarization free energy of solvation -69.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds