Wall clock time and date at job start Mon Mar 30 2020 04:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53001 * 117.51964 * 145.70217 * 2 1 3 5 5 C 1.52999 * 60.00190 * 107.47982 * 4 2 1 6 6 C 1.53002 * 117.49804 * 107.48732 * 5 4 2 7 7 N 1.46894 * 117.51960 * 252.52205 * 5 4 2 8 8 C 1.46907 * 110.99803 * 248.62731 * 7 5 4 9 9 C 1.53002 * 109.47024 * 179.97438 * 8 7 5 10 10 O 1.42901 * 109.47223 * 64.99767 * 9 8 7 11 11 C 1.42898 * 113.99834 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47143 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99929 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00163 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99920 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00024 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46819 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47110 * 119.99364 * 16 14 12 19 19 H 1.48495 * 109.46854 * 239.99342 * 16 14 12 20 20 H 1.09005 * 109.46643 * 205.58082 * 1 2 3 21 21 H 1.08996 * 109.47432 * 325.57979 * 1 2 3 22 22 H 1.09000 * 109.47232 * 85.58579 * 1 2 3 23 23 H 1.09001 * 117.49733 * 214.97413 * 4 2 1 24 24 H 1.08995 * 117.49577 * 359.97438 * 4 2 1 25 25 H 1.08998 * 109.47083 * 351.38070 * 6 5 4 26 26 H 1.08994 * 109.46707 * 111.38161 * 6 5 4 27 27 H 1.09006 * 109.47074 * 231.37967 * 6 5 4 28 28 H 1.00899 * 111.00027 * 12.57986 * 7 5 4 29 29 H 1.09004 * 109.46792 * 299.99783 * 8 7 5 30 30 H 1.08998 * 109.46965 * 59.99788 * 8 7 5 31 31 H 1.08998 * 109.47201 * 184.99983 * 9 8 7 32 32 H 1.09002 * 109.47229 * 304.99979 * 9 8 7 33 33 H 1.09002 * 109.47375 * 299.99913 * 11 10 9 34 34 H 1.08995 * 109.47302 * 60.00361 * 11 10 9 35 35 H 0.96995 * 119.99791 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1210 0.7646 5 6 2.2365 -1.1208 -0.7654 6 6 3.5488 -0.7753 -1.4722 7 7 1.3939 -2.1144 -1.4440 8 6 2.2153 -3.1202 -2.1309 9 6 1.3045 -4.1358 -2.8237 10 8 0.5629 -3.4837 -3.8566 11 6 -0.3229 -4.3484 -4.5705 12 6 -1.0489 -3.5600 -5.6301 13 1 -0.8535 -2.5042 -5.7464 14 6 -1.9631 -4.1864 -6.4503 15 7 -2.2013 -5.4720 -6.3083 16 14 -2.8634 -3.2091 -7.7632 17 1 -2.4200 -1.7927 -7.7171 18 1 -2.5603 -3.7798 -9.1002 19 1 -4.3260 -3.2779 -7.5157 20 1 -0.3633 -0.9270 0.4438 21 1 -0.3634 0.8477 0.5809 22 1 -0.3634 0.0791 -1.0246 23 1 3.1721 -0.8750 1.2677 24 1 1.6120 -1.8584 1.2682 25 1 4.2751 -0.4250 -0.7389 26 1 3.9364 -1.6626 -1.9725 27 1 3.3694 0.0080 -2.2088 28 1 0.7555 -2.5504 -0.7956 29 1 2.8444 -2.6297 -2.8737 30 1 2.8444 -3.6335 -1.4038 31 1 1.9108 -4.9306 -3.2580 32 1 0.6149 -4.5618 -2.0950 33 1 0.2500 -5.1473 -5.0412 34 1 -1.0463 -4.7792 -3.8783 35 1 -2.8443 -5.9128 -6.8855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704269988.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:22 Heat of formation + Delta-G solvation = -30.994481 kcal Electronic energy + Delta-G solvation = -14202.406912 eV Core-core repulsion = 11815.031303 eV Total energy + Delta-G solvation = -2387.375609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98235 -36.68096 -33.70526 -32.49710 -29.75096 -28.11232 -27.09311 -26.38116 -22.28677 -21.71278 -20.95815 -19.05598 -16.42289 -15.90091 -15.68652 -15.29213 -14.55546 -14.31904 -13.71164 -13.43286 -12.97973 -12.79174 -12.66245 -12.20751 -12.12889 -12.04541 -11.60507 -11.26864 -11.18211 -10.76992 -10.76004 -10.40040 -10.28007 -9.94390 -9.64842 -9.01999 -8.75941 -8.09775 -7.90079 -6.05771 -4.06445 3.32974 3.39207 3.46653 3.73745 4.22401 4.40261 4.67846 4.81504 4.87055 4.98665 5.30873 5.37416 5.51432 5.57377 5.66070 5.68093 5.74255 5.83186 5.89180 6.00383 6.02150 6.12173 6.15410 6.16006 6.36206 6.45633 7.15668 7.27241 7.49107 7.57412 7.86749 8.22571 8.67377 9.08845 9.58377 11.06055 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039418 B = 0.005803 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.156309 B = 4824.051865 C = 5133.244487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.141 4.141 3 H 0.101 0.899 4 C -0.220 4.220 5 C 0.060 3.940 6 C -0.120 4.120 7 N -0.634 5.634 8 C 0.063 3.937 9 C 0.064 3.936 10 O -0.380 6.380 11 C 0.193 3.807 12 C -0.509 4.509 13 H 0.067 0.933 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.341 0.659 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.002 0.998 34 H 0.003 0.997 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 6.956 12.463 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.160 4.160 3 H 0.119 0.881 4 C -0.259 4.259 5 C -0.033 4.033 6 C -0.177 4.177 7 N -0.263 5.263 8 C -0.066 4.066 9 C -0.014 4.014 10 O -0.299 6.299 11 C 0.118 3.882 12 C -0.547 4.547 13 H 0.086 0.914 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.021 0.979 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.936 7.365 11.742 16.491 hybrid contribution -0.307 -0.525 0.248 0.657 sum 8.629 6.840 11.991 16.279 Atomic orbital electron populations 1.21240 0.92450 1.00991 1.02748 1.22541 0.95890 0.94088 1.03522 0.88055 1.23892 1.02685 1.02888 0.96463 1.21697 0.94915 0.97536 0.89117 1.21482 0.93455 1.02541 1.00224 1.60066 1.17742 1.16434 1.32093 1.22085 0.95088 0.92560 0.96866 1.22252 0.94035 0.93822 0.91316 1.87963 1.57391 1.37087 1.47474 1.20191 0.87398 0.89978 0.90588 1.21115 1.21813 0.96521 1.15271 0.91448 1.24951 0.96793 0.95067 0.97799 1.69978 1.35186 1.09321 1.39582 0.86294 0.79205 0.80214 0.80882 1.19446 1.20909 1.20895 0.92938 0.93008 0.90988 0.89252 0.89210 0.92336 0.91231 0.91430 0.83927 0.89747 0.94670 0.94098 0.94891 0.97997 0.97918 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.50 37.16 0.35 -1.06 16 2 C -0.14 -1.66 6.13 -90.61 -0.56 -2.21 16 3 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.22 -2.39 9.52 -26.73 -0.25 -2.64 16 5 C 0.06 0.77 2.89 -131.60 -0.38 0.39 16 6 C -0.12 -1.36 9.48 37.16 0.35 -1.01 16 7 N -0.63 -9.73 6.19 -99.96 -0.62 -10.35 16 8 C 0.06 0.96 5.08 -3.82 -0.02 0.94 16 9 C 0.06 1.21 6.22 37.16 0.23 1.44 16 10 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16 11 C 0.19 5.43 5.69 36.01 0.20 5.64 16 12 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 13 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 16 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H 0.05 0.62 7.69 -51.93 -0.40 0.22 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 24 H 0.09 0.96 8.00 -51.93 -0.42 0.55 16 25 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 26 H 0.07 0.79 5.60 -51.93 -0.29 0.50 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.34 5.01 8.08 -39.29 -0.32 4.70 16 29 H 0.08 1.33 6.35 -51.93 -0.33 1.00 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -31.73 291.07 -7.30 -39.03 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.93 Total: -1.09 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -0.49 Total: -12.72 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.12 Total: -37.06 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.81 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.73 -7.30 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269988.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.040 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds