Wall clock time and date at job start Mon Mar 30 2020 04:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53001 * 117.51964 * 145.70217 * 2 1 3 5 5 C 1.52999 * 60.00190 * 107.47982 * 4 2 1 6 6 C 1.53002 * 117.49804 * 107.48732 * 5 4 2 7 7 N 1.46894 * 117.51960 * 252.52205 * 5 4 2 8 8 C 1.46907 * 110.99803 * 248.62731 * 7 5 4 9 9 C 1.53002 * 109.47024 * 179.97438 * 8 7 5 10 10 O 1.42901 * 109.47223 * 64.99767 * 9 8 7 11 11 C 1.42898 * 113.99834 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47143 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99929 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00163 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99920 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00024 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46819 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47110 * 119.99364 * 16 14 12 19 19 H 1.48495 * 109.46854 * 239.99342 * 16 14 12 20 20 H 1.09005 * 109.46643 * 205.58082 * 1 2 3 21 21 H 1.08996 * 109.47432 * 325.57979 * 1 2 3 22 22 H 1.09000 * 109.47232 * 85.58579 * 1 2 3 23 23 H 1.09001 * 117.49733 * 214.97413 * 4 2 1 24 24 H 1.08995 * 117.49577 * 359.97438 * 4 2 1 25 25 H 1.08998 * 109.47083 * 351.38070 * 6 5 4 26 26 H 1.08994 * 109.46707 * 111.38161 * 6 5 4 27 27 H 1.09006 * 109.47074 * 231.37967 * 6 5 4 28 28 H 1.00899 * 111.00027 * 12.57986 * 7 5 4 29 29 H 1.09004 * 109.46792 * 299.99783 * 8 7 5 30 30 H 1.08998 * 109.46965 * 59.99788 * 8 7 5 31 31 H 1.08998 * 109.47201 * 184.99983 * 9 8 7 32 32 H 1.09002 * 109.47229 * 304.99979 * 9 8 7 33 33 H 1.09002 * 109.47375 * 299.99913 * 11 10 9 34 34 H 1.08995 * 109.47302 * 60.00361 * 11 10 9 35 35 H 0.96995 * 119.99791 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1210 0.7646 5 6 2.2365 -1.1208 -0.7654 6 6 3.5488 -0.7753 -1.4722 7 7 1.3939 -2.1144 -1.4440 8 6 2.2153 -3.1202 -2.1309 9 6 1.3045 -4.1358 -2.8237 10 8 0.5629 -3.4837 -3.8566 11 6 -0.3229 -4.3484 -4.5705 12 6 -1.0489 -3.5600 -5.6301 13 1 -0.8535 -2.5042 -5.7464 14 6 -1.9631 -4.1864 -6.4503 15 7 -2.2013 -5.4720 -6.3083 16 14 -2.8634 -3.2091 -7.7632 17 1 -2.4200 -1.7927 -7.7171 18 1 -2.5603 -3.7798 -9.1002 19 1 -4.3260 -3.2779 -7.5157 20 1 -0.3633 -0.9270 0.4438 21 1 -0.3634 0.8477 0.5809 22 1 -0.3634 0.0791 -1.0246 23 1 3.1721 -0.8750 1.2677 24 1 1.6120 -1.8584 1.2682 25 1 4.2751 -0.4250 -0.7389 26 1 3.9364 -1.6626 -1.9725 27 1 3.3694 0.0080 -2.2088 28 1 0.7555 -2.5504 -0.7956 29 1 2.8444 -2.6297 -2.8737 30 1 2.8444 -3.6335 -1.4038 31 1 1.9108 -4.9306 -3.2580 32 1 0.6149 -4.5618 -2.0950 33 1 0.2500 -5.1473 -5.0412 34 1 -1.0463 -4.7792 -3.8783 35 1 -2.8443 -5.9128 -6.8855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704269988.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:22 Heat of formation + Delta-G solvation = -52.574571 kcal Electronic energy + Delta-G solvation = -14203.342695 eV Core-core repulsion = 11815.031303 eV Total energy + Delta-G solvation = -2388.311392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99885 -38.48366 -35.26292 -34.46478 -30.79785 -29.82042 -28.34301 -27.88238 -24.48711 -23.06259 -21.91488 -20.06267 -18.63859 -17.55500 -16.90156 -16.78292 -16.15448 -16.07113 -15.07399 -14.78549 -14.48591 -14.06254 -13.73766 -13.62242 -13.27385 -13.10023 -12.98802 -12.85327 -12.79469 -12.57123 -12.24818 -12.15883 -11.67178 -11.30977 -11.19612 -10.87616 -10.61127 -10.18481 -8.96780 -8.31639 -6.43448 1.39947 1.41560 1.56644 2.35824 2.79129 3.02023 3.16089 3.25751 3.76845 3.91616 3.98660 4.26630 4.27987 4.48082 4.50184 4.65890 4.67850 4.79580 4.85659 4.87420 4.90600 5.00025 5.02611 5.07417 5.19265 5.23504 5.26638 5.48325 5.56414 5.98090 6.18802 6.44528 6.58265 6.87078 7.28960 8.81054 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039418 B = 0.005803 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.156309 B = 4824.051865 C = 5133.244487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.147 4.147 3 H 0.114 0.886 4 C -0.198 4.198 5 C 0.040 3.960 6 C -0.118 4.118 7 N -0.658 5.658 8 C 0.074 3.926 9 C 0.054 3.946 10 O -0.396 6.396 11 C 0.208 3.792 12 C -0.545 4.545 13 H 0.059 0.941 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.983 3.017 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.271 1.271 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.045 0.955 23 H 0.109 0.891 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.341 0.659 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.037 0.963 33 H -0.015 1.015 34 H -0.017 1.017 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.593 7.887 12.922 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.166 4.166 3 H 0.132 0.868 4 C -0.238 4.238 5 C -0.052 4.052 6 C -0.175 4.175 7 N -0.288 5.288 8 C -0.054 4.054 9 C -0.024 4.024 10 O -0.316 6.316 11 C 0.133 3.867 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.806 3.194 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.196 1.196 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.127 0.873 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.160 0.840 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.002 0.998 34 H 0.001 0.999 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.422 8.295 12.224 17.522 hybrid contribution -0.416 -0.846 0.190 0.962 sum 9.006 7.449 12.414 17.050 Atomic orbital electron populations 1.21200 0.93115 1.01651 1.01300 1.22642 0.95524 0.94801 1.03660 0.86815 1.23889 1.03167 1.01850 0.94879 1.21843 0.95363 0.97549 0.90467 1.21491 0.93334 1.02158 1.00556 1.60022 1.18783 1.16905 1.33110 1.21966 0.94244 0.92023 0.97181 1.22623 0.94246 0.95324 0.90175 1.87917 1.57384 1.37420 1.48861 1.19807 0.87190 0.89630 0.90100 1.21412 1.23480 0.96448 1.16945 0.92322 1.25957 0.97122 0.96206 0.99923 1.70076 1.35566 1.10938 1.40539 0.85137 0.77986 0.78564 0.77721 1.18999 1.19480 1.19585 0.93141 0.91349 0.93623 0.87305 0.89085 0.89989 0.91481 0.92457 0.83965 0.90192 0.91453 0.93189 0.94453 0.99751 0.99939 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.50 71.98 0.68 -2.02 16 2 C -0.15 -3.21 6.13 -10.79 -0.07 -3.27 16 3 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.20 -3.79 9.52 30.59 0.29 -3.50 16 5 C 0.04 0.95 2.89 3.53 0.01 0.96 16 6 C -0.12 -2.48 9.48 71.98 0.68 -1.79 16 7 N -0.66 -19.83 6.19 -470.16 -2.91 -22.74 16 8 C 0.07 2.21 5.08 86.30 0.44 2.65 16 9 C 0.05 2.04 6.22 71.98 0.45 2.48 16 10 O -0.40 -20.20 10.27 -148.98 -1.53 -21.73 16 11 C 0.21 12.11 5.69 71.24 0.41 12.51 16 12 C -0.55 -33.63 9.43 25.60 0.24 -33.39 16 13 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 14 C 0.01 0.36 5.46 84.65 0.46 0.82 16 15 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 16 Si 0.98 45.48 29.54 68.60 2.03 47.51 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H 0.05 1.17 7.69 -2.38 -0.02 1.15 16 21 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.11 1.68 8.05 -2.39 -0.02 1.66 16 24 H 0.09 1.73 8.00 -2.39 -0.02 1.71 16 25 H 0.08 1.30 7.90 -2.39 -0.02 1.28 16 26 H 0.07 1.42 5.60 -2.39 -0.01 1.41 16 27 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 28 H 0.34 9.91 8.08 -89.69 -0.72 9.18 16 29 H 0.08 2.45 6.35 -2.38 -0.02 2.44 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -68.13 291.07 1.79 -66.34 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.32 Total: 11.96 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 3.60 Total: -24.55 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -2.62 Total: -79.53 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.53 Total: -21.73 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -68.13 1.79 -66.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269988.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.762 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds