Wall clock time and date at job start Mon Mar 30 2020 04:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.54887 * 2 1 4 4 C 1.52996 * 117.49691 * 214.29075 * 2 1 3 5 5 C 1.53001 * 60.00150 * 252.51471 * 4 2 1 6 6 C 1.52994 * 117.51640 * 252.52301 * 5 4 2 7 7 N 1.46895 * 117.50002 * 107.49146 * 5 4 2 8 8 C 1.46893 * 111.00168 * 111.37671 * 7 5 4 9 9 C 1.52999 * 109.47520 * 180.02562 * 8 7 5 10 10 O 1.42901 * 109.47135 * 65.00085 * 9 8 7 11 11 C 1.42902 * 113.99925 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.46974 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00069 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99806 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46845 * 90.00621 * 16 14 12 18 18 H 1.48503 * 109.47399 * 210.00111 * 16 14 12 19 19 H 1.48498 * 109.47295 * 330.00717 * 16 14 12 20 20 H 1.09000 * 109.47072 * 274.32981 * 1 2 3 21 21 H 1.09004 * 109.46697 * 34.33139 * 1 2 3 22 22 H 1.08996 * 109.47330 * 154.32648 * 1 2 3 23 23 H 1.09004 * 117.49573 * 145.02450 * 4 2 1 24 24 H 1.09000 * 117.50309 * 0.02562 * 4 2 1 25 25 H 1.09005 * 109.47220 * 248.71383 * 6 5 4 26 26 H 1.09004 * 109.47727 * 8.71459 * 6 5 4 27 27 H 1.09008 * 109.47361 * 128.71449 * 6 5 4 28 28 H 1.00897 * 111.00108 * 235.33740 * 7 5 4 29 29 H 1.09005 * 109.46894 * 59.99921 * 8 7 5 30 30 H 1.09001 * 109.47623 * 300.00243 * 8 7 5 31 31 H 1.09001 * 109.46860 * 304.99938 * 9 8 7 32 32 H 1.09005 * 109.47366 * 185.00687 * 9 8 7 33 33 H 1.09008 * 109.47024 * 60.00004 * 11 10 9 34 34 H 1.08991 * 109.47301 * 300.00125 * 11 10 9 35 35 H 0.97000 * 119.99838 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 -0.7646 5 6 2.2364 -1.1208 0.7654 6 6 3.5486 -0.7754 1.4722 7 7 1.3938 -2.1144 1.4440 8 6 2.2150 -3.1202 2.1308 9 6 1.3043 -4.1358 2.8236 10 8 0.5637 -4.8605 1.8395 11 6 -0.3230 -5.8399 2.3841 12 6 -1.0487 -6.5389 1.2635 13 1 -0.8521 -6.2631 0.2380 14 6 -1.9628 -7.5313 1.5475 15 7 -2.2018 -7.8675 2.7963 16 14 -2.8618 -8.3982 0.1584 17 1 -2.0803 -9.5853 -0.2721 18 1 -4.2014 -8.8321 0.6303 19 1 -3.0185 -7.4666 -0.9874 20 1 -0.3633 0.0776 1.0247 21 1 -0.3633 0.8487 -0.5796 22 1 -0.3634 -0.9262 -0.4452 23 1 3.1716 -0.8756 -1.2679 24 1 1.6112 -1.8587 -1.2680 25 1 3.9372 -1.6632 1.9712 26 1 4.2746 -0.4236 0.7391 27 1 3.3691 0.0068 2.2099 28 1 0.7553 -1.6692 2.0860 29 1 2.8442 -2.6298 2.8736 30 1 2.8442 -3.6336 1.4037 31 1 0.6141 -3.6127 3.4855 32 1 1.9106 -4.8297 3.4060 33 1 -1.0470 -5.3518 3.0367 34 1 0.2491 -6.5691 2.9576 35 1 -1.7347 -7.4175 3.5176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704269997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:24 Heat of formation + Delta-G solvation = -34.706354 kcal Electronic energy + Delta-G solvation = -14241.069478 eV Core-core repulsion = 11853.532910 eV Total energy + Delta-G solvation = -2387.536568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.89788 -36.83324 -33.90854 -32.71700 -29.76711 -28.00395 -27.02547 -26.03120 -22.45638 -21.91233 -20.76530 -19.19924 -16.93451 -15.96697 -15.65961 -15.13874 -14.80908 -14.21467 -13.69410 -13.43256 -13.17947 -12.98358 -12.67254 -12.21330 -12.17294 -11.87448 -11.58298 -11.35411 -11.28393 -11.00772 -10.65691 -10.18549 -10.07662 -9.99546 -9.55293 -8.78694 -8.57889 -8.18869 -8.13027 -6.41767 -4.09342 3.45832 3.50477 3.67171 3.73162 4.11602 4.48212 4.67740 4.80379 4.89231 5.01735 5.34987 5.36192 5.41775 5.53797 5.58333 5.64392 5.66694 5.84385 5.88290 5.90302 5.98962 6.01019 6.09173 6.20718 6.29098 6.46906 6.81186 7.18373 7.26131 7.54933 7.97393 8.25133 8.71615 8.87800 9.61230 10.98597 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038074 B = 0.005981 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.240284 B = 4680.141037 C = 5103.379181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.146 4.146 3 H 0.098 0.902 4 C -0.157 4.157 5 C 0.034 3.966 6 C -0.145 4.145 7 N -0.636 5.636 8 C 0.066 3.934 9 C 0.062 3.938 10 O -0.371 6.371 11 C 0.184 3.816 12 C -0.592 4.592 13 H 0.061 0.939 14 C 0.015 3.985 15 N -0.914 5.914 16 Si 1.081 2.919 17 H -0.286 1.286 18 H -0.283 1.283 19 H -0.286 1.286 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.339 0.661 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.040 0.960 33 H -0.007 1.007 34 H -0.008 1.008 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 14.812 -2.320 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.165 4.165 3 H 0.116 0.884 4 C -0.195 4.195 5 C -0.058 4.058 6 C -0.204 4.204 7 N -0.266 5.266 8 C -0.063 4.063 9 C -0.017 4.017 10 O -0.290 6.290 11 C 0.110 3.890 12 C -0.630 4.630 13 H 0.079 0.921 14 C -0.187 4.187 15 N -0.550 5.550 16 Si 0.909 3.091 17 H -0.213 1.213 18 H -0.209 1.209 19 H -0.212 1.212 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.159 0.841 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.011 0.989 34 H 0.010 0.990 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.980 13.267 -3.396 15.850 hybrid contribution 1.545 1.659 1.551 2.747 sum 9.525 14.925 -1.845 17.801 Atomic orbital electron populations 1.21230 0.92369 1.02258 1.01596 1.22523 0.95904 0.93495 1.04603 0.88364 1.23316 1.01877 1.00798 0.93522 1.21575 0.94360 0.96232 0.93634 1.21848 0.96140 1.01763 1.00664 1.60190 1.17940 1.13533 1.34972 1.22042 0.94952 0.92407 0.96921 1.22309 0.94080 0.93500 0.91766 1.87999 1.57101 1.52532 1.31356 1.20274 0.87446 0.85776 0.95550 1.21935 1.25349 1.21622 0.94097 0.92081 1.25933 0.95902 0.95479 1.01416 1.70773 1.42487 1.42561 0.99221 0.83373 0.76210 0.75676 0.73866 1.21294 1.20893 1.21207 0.92637 0.92823 0.91329 0.89364 0.87924 0.91323 0.92037 0.92531 0.84118 0.94194 0.90278 0.94839 0.94170 0.98930 0.99040 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.49 37.16 0.35 -1.03 16 2 C -0.15 -1.68 6.13 -90.62 -0.56 -2.24 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.16 -1.98 9.75 -26.73 -0.26 -2.24 16 5 C 0.03 0.43 2.77 -131.61 -0.37 0.07 16 6 C -0.15 -1.53 9.48 37.15 0.35 -1.17 16 7 N -0.64 -9.77 6.12 -99.97 -0.61 -10.39 16 8 C 0.07 1.02 5.08 -3.83 -0.02 1.00 16 9 C 0.06 1.17 6.22 37.16 0.23 1.40 16 10 O -0.37 -9.36 10.27 -35.23 -0.36 -9.72 16 11 C 0.18 5.20 5.00 36.00 0.18 5.38 16 12 C -0.59 -18.18 9.43 -34.44 -0.32 -18.51 16 13 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 14 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 15 N -0.91 -28.62 13.65 55.43 0.76 -27.86 16 16 Si 1.08 26.15 29.90 -169.99 -5.08 21.06 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H 0.05 0.64 7.93 -51.93 -0.41 0.23 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 23 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 24 H 0.10 1.49 8.05 -51.93 -0.42 1.07 16 25 H 0.07 0.73 5.61 -51.93 -0.29 0.44 16 26 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.34 4.97 8.38 -39.29 -0.33 4.64 16 29 H 0.04 0.51 6.35 -51.93 -0.33 0.18 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H -0.01 -0.20 8.01 -51.92 -0.42 -0.62 16 34 H -0.01 -0.23 8.01 -51.93 -0.42 -0.65 16 35 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -32.74 290.16 -7.32 -40.06 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.89 Total: -0.56 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.51 Total: -16.97 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.15 Total: -38.24 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.36 Total: -9.72 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.08 Total: 21.06 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.74 -7.32 -40.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.356 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds