Wall clock time and date at job start Mon Mar 30 2020 04:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00249 * 2 1 4 4 C 1.50703 * 109.61742 * 307.42677 * 3 2 1 5 5 H 1.07997 * 120.00254 * 145.30162 * 4 3 2 6 6 C 1.37877 * 119.99757 * 325.29620 * 4 3 2 7 7 N 1.31515 * 120.00132 * 170.95020 * 6 4 3 8 8 Si 1.86807 * 120.00023 * 350.95207 * 6 4 3 9 9 H 1.48496 * 109.47265 * 94.29421 * 8 6 4 10 10 H 1.48499 * 109.47062 * 214.29466 * 8 6 4 11 11 H 1.48502 * 109.46891 * 334.29054 * 8 6 4 12 12 C 1.53177 * 109.54550 * 187.20536 * 3 2 1 13 13 C 1.53091 * 109.16241 * 297.11426 * 12 3 2 14 14 H 1.08997 * 109.48357 * 182.39781 * 13 12 3 15 15 C 1.53003 * 109.48299 * 62.37182 * 13 12 3 16 16 O 1.42911 * 109.41429 * 302.38920 * 13 12 3 17 17 C 1.42907 * 114.09560 * 61.15733 * 16 13 12 18 18 H 1.09001 * 109.47904 * 58.82500 * 17 16 13 19 19 C 1.52995 * 109.48527 * 178.85066 * 17 16 13 20 20 C 1.53086 * 109.41351 * 298.84128 * 17 16 13 21 21 H 1.08997 * 109.47231 * 184.90711 * 1 2 3 22 22 H 1.09008 * 109.46675 * 304.90110 * 1 2 3 23 23 H 1.08996 * 109.47256 * 64.89634 * 1 2 3 24 24 H 1.00899 * 111.00256 * 123.95766 * 2 1 3 25 25 H 0.96998 * 119.99913 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.52719 * 177.21187 * 12 3 2 27 27 H 1.08998 * 109.57749 * 57.04749 * 12 3 2 28 28 H 1.09004 * 109.46800 * 22.98311 * 15 13 12 29 29 H 1.08997 * 109.47015 * 262.98385 * 15 13 12 30 30 H 1.08996 * 109.47127 * 142.98460 * 15 13 12 31 31 H 1.09007 * 109.46768 * 179.97438 * 19 17 16 32 32 H 1.08996 * 109.47499 * 299.94839 * 19 17 16 33 33 H 1.09000 * 109.47215 * 59.95481 * 19 17 16 34 34 H 1.08994 * 109.52547 * 297.70372 * 20 17 16 35 35 H 1.09000 * 109.51927 * 177.51318 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.3714 2.1529 -1.1273 5 1 1.1592 3.2045 -1.0027 6 6 1.0716 1.5255 -2.3179 7 7 0.3689 2.1549 -3.2342 8 14 1.6633 -0.2188 -2.6293 9 1 0.5972 -1.1790 -2.2465 10 1 1.9834 -0.3831 -4.0701 11 1 2.8799 -0.4809 -1.8190 12 6 3.5161 1.3365 -0.1811 13 6 4.1473 0.6090 1.0089 14 1 5.2325 0.6183 0.9067 15 6 3.6506 -0.8378 1.0443 16 8 3.7768 1.2698 2.2206 17 6 2.3692 1.2916 2.4665 18 1 1.9921 0.2699 2.5107 19 6 2.0944 1.9950 3.7971 20 6 1.6667 2.0466 1.3351 21 1 -0.3633 -1.0239 0.0879 22 1 -0.3633 0.5880 0.8429 23 1 -0.3633 0.4360 -0.9305 24 1 1.8306 -0.5262 0.7813 25 1 0.1583 1.7136 -4.0719 26 1 3.9006 2.3552 -0.2306 27 1 3.7622 0.8090 -1.1026 28 1 3.3184 -1.1323 0.0488 29 1 2.8188 -0.9193 1.7439 30 1 4.4609 -1.4923 1.3655 31 1 1.0206 2.0119 3.9841 32 1 2.5947 1.4574 4.6025 33 1 2.4718 3.0166 3.7528 34 1 2.0137 3.0796 1.3160 35 1 0.5891 2.0262 1.4979 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710007948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:22 Heat of formation + Delta-G solvation = -14.577268 kcal Electronic energy + Delta-G solvation = -16172.126461 eV Core-core repulsion = 13785.462755 eV Total energy + Delta-G solvation = -2386.663705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02240 -35.77061 -32.95294 -32.01223 -30.78984 -29.27731 -26.05376 -25.05369 -24.42460 -21.83202 -20.32394 -18.29332 -16.69872 -16.48297 -15.60732 -14.67806 -14.23014 -14.13120 -13.68616 -13.25121 -12.80837 -12.49765 -12.17346 -12.03768 -11.90950 -11.57466 -11.21173 -11.04648 -10.92700 -10.43185 -10.25034 -10.15636 -9.95389 -9.82332 -9.43739 -9.28954 -8.56102 -8.25943 -7.20666 -5.99198 -4.06221 3.64545 3.69512 3.88121 4.22793 4.71356 5.18867 5.19744 5.24910 5.44472 5.54048 5.58045 5.60437 5.76495 5.92360 6.05876 6.14060 6.20353 6.22676 6.28475 6.33684 6.39837 6.53767 6.59345 6.75811 6.85601 6.96275 7.09099 7.30030 7.61280 7.81044 7.88739 8.34190 8.62851 8.98877 9.64911 11.08714 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037543 B = 0.014341 C = 0.012996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.624956 B = 1951.996625 C = 2154.049708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.693 5.693 3 C 0.214 3.786 4 C -0.520 4.520 5 H 0.070 0.930 6 C 0.073 3.927 7 N -0.901 5.901 8 Si 0.957 3.043 9 H -0.295 1.295 10 H -0.343 1.343 11 H -0.259 1.259 12 C -0.138 4.138 13 C 0.080 3.920 14 H 0.090 0.910 15 C -0.198 4.198 16 O -0.382 6.382 17 C 0.076 3.924 18 H 0.049 0.951 19 C -0.140 4.140 20 C -0.159 4.159 21 H 0.039 0.961 22 H 0.018 0.982 23 H 0.086 0.914 24 H 0.329 0.671 25 H 0.262 0.738 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.907 -4.885 10.035 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.333 5.333 3 C 0.124 3.876 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.795 3.205 9 H -0.223 1.223 10 H -0.277 1.277 11 H -0.185 1.185 12 C -0.176 4.176 13 C 0.023 3.977 14 H 0.108 0.892 15 C -0.255 4.255 16 O -0.302 6.302 17 C 0.019 3.981 18 H 0.066 0.934 19 C -0.197 4.197 20 C -0.199 4.199 21 H 0.058 0.942 22 H 0.037 0.963 23 H 0.104 0.896 24 H 0.156 0.844 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.991 -4.871 9.356 11.278 hybrid contribution -0.245 -0.663 0.419 0.822 sum 3.746 -5.534 9.775 11.841 Atomic orbital electron populations 1.22238 0.89021 0.98479 1.02660 1.60981 1.07867 1.16872 1.47586 1.18932 0.91049 0.84719 0.92898 1.20695 1.41914 0.96793 0.96364 0.91165 1.25155 0.93054 0.99514 0.95255 1.70014 1.37125 1.38920 1.07649 0.85708 0.80495 0.82917 0.71383 1.22321 1.27700 1.18503 1.22659 0.97510 1.00266 0.97177 1.22322 0.98870 0.90993 0.85519 0.89204 1.22950 1.00739 0.97573 1.04244 1.87872 1.22590 1.78375 1.41370 1.22164 0.82459 0.98120 0.95402 0.93351 1.21727 1.01147 1.01114 0.95744 1.22769 0.99990 1.00777 0.96340 0.94227 0.96318 0.89576 0.84374 0.92929 0.91680 0.90286 0.88787 0.91807 0.93223 0.91624 0.92671 0.92007 0.91532 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 8.55 60.07 0.51 1.04 16 2 N -0.69 -14.51 1.74 -108.18 -0.19 -14.70 16 3 C 0.21 4.74 0.26 -132.57 -0.04 4.71 16 4 C -0.52 -14.14 7.80 -34.44 -0.27 -14.41 16 5 H 0.07 2.12 8.05 -52.49 -0.42 1.69 16 6 C 0.07 2.08 4.17 -17.82 -0.07 2.00 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.96 24.00 23.02 -169.99 -3.91 20.08 16 9 H -0.30 -7.34 6.64 56.52 0.38 -6.96 16 10 H -0.34 -9.11 7.11 56.52 0.40 -8.70 16 11 H -0.26 -6.00 3.54 56.52 0.20 -5.80 16 12 C -0.14 -2.87 4.30 -26.59 -0.11 -2.99 16 13 C 0.08 1.42 3.91 -26.68 -0.10 1.31 16 14 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 15 C -0.20 -3.19 7.88 37.16 0.29 -2.89 16 16 O -0.38 -6.94 10.24 -35.23 -0.36 -7.30 16 17 C 0.08 1.30 2.84 -26.69 -0.08 1.22 16 18 H 0.05 0.80 5.20 -51.93 -0.27 0.53 16 19 C -0.14 -1.98 9.56 37.16 0.36 -1.62 16 20 C -0.16 -3.17 4.08 -26.59 -0.11 -3.27 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.02 0.36 6.28 -51.92 -0.33 0.04 16 23 H 0.09 2.10 5.12 -51.93 -0.27 1.84 16 24 H 0.33 6.09 2.99 -39.29 -0.12 5.97 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.08 1.73 5.24 -51.93 -0.27 1.46 16 28 H 0.09 1.68 5.10 -51.93 -0.26 1.41 16 29 H 0.06 1.00 4.28 -51.93 -0.22 0.78 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.06 1.30 6.40 -51.93 -0.33 0.97 16 LS Contribution 241.72 15.07 3.64 3.64 Total: -1.00 -29.78 241.72 -4.90 -34.69 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.24 Total: 5.10 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 0.38 Total: -14.90 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.58 Total: -41.32 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.36 Total: -7.30 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -3.91 Total: 20.08 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.78 -4.90 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.110 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds