Wall clock time and date at job start Mon Mar 30 2020 04:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00249 * 2 1 4 4 C 1.50703 * 109.61742 * 307.42677 * 3 2 1 5 5 H 1.07997 * 120.00254 * 145.30162 * 4 3 2 6 6 C 1.37877 * 119.99757 * 325.29620 * 4 3 2 7 7 N 1.31515 * 120.00132 * 170.95020 * 6 4 3 8 8 Si 1.86807 * 120.00023 * 350.95207 * 6 4 3 9 9 H 1.48496 * 109.47265 * 94.29421 * 8 6 4 10 10 H 1.48499 * 109.47062 * 214.29466 * 8 6 4 11 11 H 1.48502 * 109.46891 * 334.29054 * 8 6 4 12 12 C 1.53177 * 109.54550 * 187.20536 * 3 2 1 13 13 C 1.53091 * 109.16241 * 297.11426 * 12 3 2 14 14 H 1.08997 * 109.48357 * 182.39781 * 13 12 3 15 15 C 1.53003 * 109.48299 * 62.37182 * 13 12 3 16 16 O 1.42911 * 109.41429 * 302.38920 * 13 12 3 17 17 C 1.42907 * 114.09560 * 61.15733 * 16 13 12 18 18 H 1.09001 * 109.47904 * 58.82500 * 17 16 13 19 19 C 1.52995 * 109.48527 * 178.85066 * 17 16 13 20 20 C 1.53086 * 109.41351 * 298.84128 * 17 16 13 21 21 H 1.08997 * 109.47231 * 184.90711 * 1 2 3 22 22 H 1.09008 * 109.46675 * 304.90110 * 1 2 3 23 23 H 1.08996 * 109.47256 * 64.89634 * 1 2 3 24 24 H 1.00899 * 111.00256 * 123.95766 * 2 1 3 25 25 H 0.96998 * 119.99913 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.52719 * 177.21187 * 12 3 2 27 27 H 1.08998 * 109.57749 * 57.04749 * 12 3 2 28 28 H 1.09004 * 109.46800 * 22.98311 * 15 13 12 29 29 H 1.08997 * 109.47015 * 262.98385 * 15 13 12 30 30 H 1.08996 * 109.47127 * 142.98460 * 15 13 12 31 31 H 1.09007 * 109.46768 * 179.97438 * 19 17 16 32 32 H 1.08996 * 109.47499 * 299.94839 * 19 17 16 33 33 H 1.09000 * 109.47215 * 59.95481 * 19 17 16 34 34 H 1.08994 * 109.52547 * 297.70372 * 20 17 16 35 35 H 1.09000 * 109.51927 * 177.51318 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.3714 2.1529 -1.1273 5 1 1.1592 3.2045 -1.0027 6 6 1.0716 1.5255 -2.3179 7 7 0.3689 2.1549 -3.2342 8 14 1.6633 -0.2188 -2.6293 9 1 0.5972 -1.1790 -2.2465 10 1 1.9834 -0.3831 -4.0701 11 1 2.8799 -0.4809 -1.8190 12 6 3.5161 1.3365 -0.1811 13 6 4.1473 0.6090 1.0089 14 1 5.2325 0.6183 0.9067 15 6 3.6506 -0.8378 1.0443 16 8 3.7768 1.2698 2.2206 17 6 2.3692 1.2916 2.4665 18 1 1.9921 0.2699 2.5107 19 6 2.0944 1.9950 3.7971 20 6 1.6667 2.0466 1.3351 21 1 -0.3633 -1.0239 0.0879 22 1 -0.3633 0.5880 0.8429 23 1 -0.3633 0.4360 -0.9305 24 1 1.8306 -0.5262 0.7813 25 1 0.1583 1.7136 -4.0719 26 1 3.9006 2.3552 -0.2306 27 1 3.7622 0.8090 -1.1026 28 1 3.3184 -1.1323 0.0488 29 1 2.8188 -0.9193 1.7439 30 1 4.4609 -1.4923 1.3655 31 1 1.0206 2.0119 3.9841 32 1 2.5947 1.4574 4.6025 33 1 2.4718 3.0166 3.7528 34 1 2.0137 3.0796 1.3160 35 1 0.5891 2.0262 1.4979 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710007948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:21 Heat of formation + Delta-G solvation = -35.658623 kcal Electronic energy + Delta-G solvation = -16173.040617 eV Core-core repulsion = 13785.462755 eV Total energy + Delta-G solvation = -2387.577862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.56634 -37.40961 -34.31483 -34.13720 -32.41119 -30.74200 -27.52944 -26.94117 -26.13459 -23.26025 -21.95383 -19.92683 -18.71045 -18.02683 -17.11800 -16.44840 -15.82438 -15.75847 -15.21486 -14.94446 -14.54935 -14.21584 -13.73256 -13.46442 -13.23763 -12.97853 -12.73448 -12.57612 -12.52835 -12.24036 -12.03783 -11.83818 -11.68050 -11.50618 -11.44589 -10.79900 -10.51018 -10.04874 -8.94342 -8.21471 -6.30808 1.62072 1.63712 1.87496 2.61090 2.89525 3.11654 3.57437 3.92223 4.04487 4.14522 4.15987 4.25367 4.42147 4.50846 4.59984 4.67685 4.73588 4.82567 4.85183 4.95933 5.04640 5.10970 5.18109 5.24657 5.32299 5.38934 5.41013 5.51076 5.74115 5.93889 6.41369 6.47607 6.61213 6.92987 7.44533 8.90208 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037543 B = 0.014341 C = 0.012996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.624956 B = 1951.996625 C = 2154.049708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.691 5.691 3 C 0.212 3.788 4 C -0.517 4.517 5 H 0.022 0.978 6 C 0.026 3.974 7 N -0.952 5.952 8 Si 1.010 2.990 9 H -0.287 1.287 10 H -0.365 1.365 11 H -0.227 1.227 12 C -0.139 4.139 13 C 0.083 3.917 14 H 0.113 0.887 15 C -0.195 4.195 16 O -0.386 6.386 17 C 0.079 3.921 18 H 0.064 0.936 19 C -0.137 4.137 20 C -0.155 4.155 21 H 0.070 0.930 22 H 0.029 0.971 23 H 0.045 0.955 24 H 0.349 0.651 25 H 0.260 0.740 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 -7.270 12.521 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.334 5.334 3 C 0.122 3.878 4 C -0.555 4.555 5 H 0.041 0.959 6 C -0.172 4.172 7 N -0.591 5.591 8 Si 0.847 3.153 9 H -0.214 1.214 10 H -0.301 1.301 11 H -0.152 1.152 12 C -0.177 4.177 13 C 0.026 3.974 14 H 0.131 0.869 15 C -0.252 4.252 16 O -0.306 6.306 17 C 0.021 3.979 18 H 0.082 0.918 19 C -0.194 4.194 20 C -0.195 4.195 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.179 0.821 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.221 -7.260 11.897 14.883 hybrid contribution -0.663 0.204 -0.335 0.770 sum 4.558 -7.056 11.562 14.291 Atomic orbital electron populations 1.22185 0.88977 1.00220 1.01004 1.60799 1.08005 1.15890 1.48739 1.18799 0.91698 0.85202 0.92074 1.20936 1.41189 0.95204 0.98160 0.95942 1.25932 0.93026 1.03263 0.94971 1.70149 1.39632 1.40908 1.08449 0.84839 0.81508 0.78689 0.70303 1.21376 1.30133 1.15173 1.22559 0.96441 0.99983 0.98734 1.22354 0.99988 0.91471 0.83636 0.86895 1.22862 1.02156 0.96570 1.03600 1.87897 1.23013 1.78592 1.41115 1.22237 0.81699 0.98629 0.95294 0.91826 1.21735 1.02449 1.00701 0.94523 1.22668 1.00186 1.00029 0.96600 0.91177 0.95236 0.93603 0.82084 0.93192 0.93277 0.91330 0.90269 0.91099 0.90055 0.90130 0.90644 0.92559 0.93457 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 8.55 127.69 1.09 2.10 16 2 N -0.69 -27.19 1.74 -496.16 -0.87 -28.05 16 3 C 0.21 9.26 0.26 2.90 0.00 9.26 16 4 C -0.52 -29.03 7.80 25.60 0.20 -28.83 16 5 H 0.02 1.43 8.05 -2.91 -0.02 1.41 16 6 C 0.03 1.50 4.17 84.65 0.35 1.86 16 7 N -0.95 -60.50 13.96 21.45 0.30 -60.21 16 8 Si 1.01 49.48 23.02 68.60 1.58 51.06 16 9 H -0.29 -13.52 6.64 99.48 0.66 -12.86 16 10 H -0.37 -19.20 7.11 99.48 0.71 -18.49 16 11 H -0.23 -9.83 3.54 99.48 0.35 -9.48 16 12 C -0.14 -5.58 4.30 30.68 0.13 -5.45 16 13 C 0.08 2.62 3.91 30.63 0.12 2.74 16 14 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 15 C -0.19 -5.30 7.88 71.98 0.57 -4.73 16 16 O -0.39 -12.61 10.24 -148.98 -1.53 -14.14 16 17 C 0.08 2.42 2.84 30.62 0.09 2.51 16 18 H 0.06 1.80 5.20 -2.39 -0.01 1.78 16 19 C -0.14 -3.38 9.56 71.98 0.69 -2.69 16 20 C -0.16 -6.01 4.08 30.68 0.13 -5.89 16 21 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 22 H 0.03 1.09 6.28 -2.38 -0.01 1.08 16 23 H 0.05 2.21 5.12 -2.39 -0.01 2.20 16 24 H 0.35 11.47 2.99 -89.69 -0.27 11.20 16 25 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 2.88 5.24 -2.39 -0.01 2.87 16 28 H 0.08 2.44 5.10 -2.39 -0.01 2.43 16 29 H 0.07 1.83 4.28 -2.39 -0.01 1.82 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 2.38 6.40 -2.39 -0.02 2.37 16 Total: -1.00 -66.50 241.72 3.27 -63.24 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.41 Total: 17.22 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 3.37 Total: -29.13 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -0.57 Total: -88.26 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.53 Total: -14.14 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.58 Total: 51.06 kcal Total: -66.50 3.27 -63.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.579 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds