Wall clock time and date at job start Mon Mar 30 2020 04:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99937 * 2 1 4 4 C 1.50700 * 109.54658 * 305.36551 * 3 2 1 5 5 H 1.08000 * 119.99831 * 122.30963 * 4 3 2 6 6 C 1.37882 * 119.99930 * 302.59461 * 4 3 2 7 7 N 1.31513 * 120.00033 * 5.47564 * 6 4 3 8 8 Si 1.86802 * 119.99822 * 185.47581 * 6 4 3 9 9 H 1.48499 * 109.46713 * 60.00079 * 8 6 4 10 10 H 1.48496 * 109.47127 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47346 * 299.99864 * 8 6 4 12 12 C 1.53176 * 109.61922 * 65.58851 * 3 2 1 13 13 C 1.53089 * 109.16471 * 176.88956 * 12 3 2 14 14 H 1.08995 * 109.48129 * 62.37755 * 13 12 3 15 15 C 1.52999 * 109.47894 * 182.41221 * 13 12 3 16 16 O 1.42899 * 109.41492 * 302.39122 * 13 12 3 17 17 C 1.42905 * 114.09704 * 61.16130 * 16 13 12 18 18 H 1.08999 * 109.47899 * 178.85603 * 17 16 13 19 19 C 1.52998 * 109.49028 * 58.82858 * 17 16 13 20 20 C 1.53087 * 109.41439 * 298.83755 * 17 16 13 21 21 H 1.09000 * 109.47063 * 64.61861 * 1 2 3 22 22 H 1.08994 * 109.47094 * 184.62195 * 1 2 3 23 23 H 1.09004 * 109.46997 * 304.61910 * 1 2 3 24 24 H 1.00908 * 110.99672 * 236.05207 * 2 1 3 25 25 H 0.97003 * 119.99911 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.52075 * 296.80246 * 12 3 2 27 27 H 1.09004 * 109.51743 * 56.98064 * 12 3 2 28 28 H 1.08998 * 109.47458 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47136 * 299.94410 * 15 13 12 30 30 H 1.09001 * 109.47611 * 59.94149 * 15 13 12 31 31 H 1.08997 * 109.47117 * 315.69568 * 19 17 16 32 32 H 1.09001 * 109.47473 * 75.69186 * 19 17 16 33 33 H 1.08999 * 109.47190 * 195.69305 * 19 17 16 34 34 H 1.09007 * 109.52674 * 297.70443 * 20 17 16 35 35 H 1.09001 * 109.57826 * 177.54678 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.4087 2.1367 -1.1581 5 1 0.8559 3.0471 -0.9791 6 6 1.5727 1.6715 -2.4457 7 7 2.1464 0.5070 -2.6560 8 14 0.9800 2.6955 -3.8913 9 1 1.6809 4.0047 -3.8908 10 1 1.2723 1.9786 -5.1585 11 1 -0.4835 2.9174 -3.7737 12 6 1.6230 2.0653 1.3138 13 6 2.2420 3.4653 1.3359 14 1 1.8288 4.0583 0.5200 15 6 1.9249 4.1424 2.6707 16 8 3.6585 3.3609 1.1792 17 6 4.0668 2.7629 -0.0528 18 1 5.1554 2.7393 -0.1022 19 6 3.5205 3.5823 -1.2237 20 6 3.5212 1.3347 -0.1306 21 1 -0.3633 0.4405 -0.9285 22 1 -0.3633 -1.0243 0.0828 23 1 -0.3633 0.5839 0.8457 24 1 1.8305 -0.5261 -0.7815 25 1 2.2621 0.1799 -3.5619 26 1 0.5385 2.1452 1.3889 27 1 2.0053 1.4847 2.1534 28 1 2.3660 5.1390 2.6865 29 1 0.8443 4.2219 2.7901 30 1 2.3377 3.5489 3.4864 31 1 2.4796 3.8419 -1.0311 32 1 4.1077 4.4940 -1.3345 33 1 3.5851 2.9950 -2.1396 34 1 3.9419 0.7393 0.6798 35 1 3.7942 0.8910 -1.0881 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710007952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:24 Heat of formation + Delta-G solvation = -43.413710 kcal Electronic energy + Delta-G solvation = -16146.254623 eV Core-core repulsion = 13758.340476 eV Total energy + Delta-G solvation = -2387.914147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.23168 -35.39878 -32.69484 -31.56335 -30.60419 -27.85180 -26.24638 -25.11500 -23.44168 -21.39044 -19.92059 -18.53112 -15.98493 -15.53390 -15.10498 -14.95189 -13.87940 -13.47039 -13.30909 -12.82775 -12.49171 -12.11840 -11.93773 -11.65707 -11.60296 -11.26952 -11.17242 -10.79029 -10.55578 -10.47063 -10.29215 -10.10203 -9.84662 -9.50105 -9.09186 -8.94521 -8.43971 -8.35072 -6.97411 -6.03061 -4.13476 3.20129 3.26310 3.30018 4.29911 4.66990 5.09794 5.60872 5.79886 5.91746 6.04230 6.09755 6.27664 6.30870 6.40960 6.42735 6.55483 6.58681 6.65954 6.82733 6.87142 6.96013 7.04197 7.08603 7.18933 7.21734 7.44610 7.59134 7.64072 7.76411 8.18076 8.30507 8.67251 8.84826 9.17247 9.48791 10.87777 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028598 B = 0.015628 C = 0.013185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.868596 B = 1791.282037 C = 2123.082346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.691 5.691 3 C 0.232 3.768 4 C -0.521 4.521 5 H 0.054 0.946 6 C 0.072 3.928 7 N -0.891 5.891 8 Si 0.878 3.122 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.124 4.124 13 C 0.089 3.911 14 H 0.063 0.937 15 C -0.142 4.142 16 O -0.392 6.392 17 C 0.103 3.897 18 H 0.075 0.925 19 C -0.169 4.169 20 C -0.127 4.127 21 H 0.026 0.974 22 H 0.029 0.971 23 H 0.038 0.962 24 H 0.357 0.643 25 H 0.265 0.735 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 3.278 3.807 5.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.325 5.325 3 C 0.142 3.858 4 C -0.561 4.561 5 H 0.072 0.928 6 C -0.130 4.130 7 N -0.530 5.530 8 Si 0.705 3.295 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.163 4.163 13 C 0.032 3.968 14 H 0.081 0.919 15 C -0.199 4.199 16 O -0.312 6.312 17 C 0.046 3.954 18 H 0.093 0.907 19 C -0.226 4.226 20 C -0.166 4.166 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.179 0.821 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.243 3.115 4.467 5.451 hybrid contribution -0.726 0.677 -2.131 2.351 sum -0.483 3.792 2.335 4.480 Atomic orbital electron populations 1.21765 0.91301 0.97574 0.99482 1.61008 1.05674 1.15682 1.50148 1.18420 0.90687 0.86467 0.90184 1.21556 1.33780 1.09096 0.91652 0.92810 1.24843 0.94799 0.94945 0.98401 1.69595 1.43922 1.17990 1.21503 0.86879 0.79344 0.80990 0.82252 1.19797 1.21279 1.20408 1.22146 0.99302 0.95388 0.99437 1.21973 0.82134 0.96385 0.96355 0.91896 1.21772 1.00696 1.00222 0.97222 1.87757 1.22006 1.82060 1.39399 1.21945 0.96741 0.93224 0.83538 0.90747 1.22759 1.03167 0.97605 0.99089 1.22054 0.97979 0.94635 1.01885 0.95509 0.95241 0.94320 0.82114 0.92506 0.92799 0.93255 0.92885 0.91972 0.92597 0.88801 0.96539 0.91616 0.94673 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.09 10.05 60.06 0.60 1.69 16 2 N -0.69 -16.34 6.37 -108.18 -0.69 -17.03 16 3 C 0.23 5.41 0.43 -132.57 -0.06 5.35 16 4 C -0.52 -12.71 2.83 -34.44 -0.10 -12.81 16 5 H 0.05 1.35 6.31 -52.49 -0.33 1.02 16 6 C 0.07 1.78 3.41 -17.82 -0.06 1.72 16 7 N -0.89 -22.71 9.78 55.43 0.54 -22.17 16 8 Si 0.88 20.01 29.15 -169.99 -4.96 15.05 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C -0.12 -2.65 4.00 -26.59 -0.11 -2.76 16 13 C 0.09 1.78 2.85 -26.69 -0.08 1.70 16 14 H 0.06 1.31 5.17 -51.93 -0.27 1.05 16 15 C -0.14 -2.29 9.56 37.16 0.36 -1.93 16 16 O -0.39 -8.34 10.24 -35.23 -0.36 -8.70 16 17 C 0.10 2.21 3.91 -26.69 -0.10 2.10 16 18 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 19 C -0.17 -3.65 7.73 37.16 0.29 -3.36 16 20 C -0.13 -2.93 4.64 -26.59 -0.12 -3.05 16 21 H 0.03 0.63 6.93 -51.93 -0.36 0.27 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.80 6.33 -51.93 -0.33 0.47 16 24 H 0.36 8.99 6.58 -39.29 -0.26 8.73 16 25 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 26 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 2.12 3.29 -51.93 -0.17 1.95 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 1.51 6.18 -51.93 -0.32 1.19 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 2.18 6.44 -51.93 -0.33 1.85 16 LS Contribution 253.55 15.07 3.82 3.82 Total: -1.00 -25.13 253.55 -6.25 -31.38 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.23 Total: 9.00 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 0.62 Total: -11.35 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.15 Total: -39.20 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.36 Total: -8.70 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.96 Total: 15.05 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -25.13 -6.25 -31.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.032 kcal (2) G-P(sol) polarization free energy of solvation -25.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds