Wall clock time and date at job start Mon Mar 30 2020 04:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46289 * 2 1 4 4 C 1.53039 * 109.46046 * 240.02125 * 2 1 3 5 5 C 1.53119 * 109.27319 * 180.80420 * 4 2 1 6 6 O 1.42901 * 109.51910 * 177.55624 * 5 4 2 7 7 C 1.34934 * 116.99894 * 150.12841 * 6 5 4 8 8 H 1.07999 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.38637 * 119.99727 * 179.97438 * 7 6 5 10 10 N 1.31581 * 120.00374 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99524 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47488 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46997 * 120.00520 * 11 9 7 14 14 H 1.48505 * 109.47163 * 239.99771 * 11 9 7 15 15 C 1.53122 * 109.21622 * 57.62203 * 5 4 2 16 16 C 1.53048 * 109.27351 * 302.43991 * 15 5 4 17 17 H 1.09000 * 109.45260 * 179.12628 * 16 15 5 18 18 C 1.52998 * 109.40714 * 299.06770 * 16 15 5 19 19 N 1.46846 * 109.46130 * 119.96495 * 2 1 3 20 20 C 1.46896 * 111.00175 * 305.85502 * 19 2 1 21 21 H 1.08994 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47248 * 299.98460 * 1 2 3 23 23 H 1.09002 * 109.47137 * 59.97764 * 1 2 3 24 24 H 1.08993 * 109.50428 * 60.86609 * 4 2 1 25 25 H 1.08995 * 109.49952 * 300.74206 * 4 2 1 26 26 H 1.08996 * 109.53179 * 297.68100 * 5 4 2 27 27 H 0.96996 * 119.99866 * 179.97438 * 10 9 7 28 28 H 1.09009 * 109.50142 * 62.31364 * 15 5 4 29 29 H 1.08995 * 109.50712 * 182.42879 * 15 5 4 30 30 H 1.08995 * 109.47007 * 180.08685 * 18 16 15 31 31 H 1.09003 * 109.46933 * 300.08556 * 18 16 15 32 32 H 1.08997 * 109.47344 * 60.08458 * 18 16 15 33 33 H 1.09000 * 109.46947 * 59.99665 * 20 19 2 34 34 H 1.09001 * 109.47134 * 180.02562 * 20 19 2 35 35 H 1.09007 * 109.46953 * 300.00039 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7361 -1.2355 6 8 4.0520 -1.4577 -2.3712 7 6 5.2478 -1.0844 -2.8726 8 1 5.7955 -0.2734 -2.4158 9 6 5.7739 -1.7426 -3.9735 10 7 5.1069 -2.7311 -4.5298 11 14 7.4290 -1.2253 -4.6680 12 1 7.9707 -0.0973 -3.8685 13 1 8.3712 -2.3715 -4.6076 14 1 7.2613 -0.7964 -6.0798 15 6 4.0561 -1.4178 0.0469 16 6 3.4864 -0.6774 1.2592 17 1 3.8175 -1.1697 2.1737 18 6 3.9831 0.7697 1.2507 19 7 2.0192 -0.6915 1.1995 20 6 1.4373 -0.1102 2.4165 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5136 0.8901 23 1 -0.3633 0.5142 -0.8898 24 1 1.6895 -0.1984 -2.1399 25 1 1.6659 -1.7448 -1.2574 26 1 3.9457 0.2868 -1.2684 27 1 5.4748 -3.1913 -5.3003 28 1 3.7147 -2.4529 0.0604 29 1 5.1452 -1.3928 0.0827 30 1 3.5792 1.2975 2.1145 31 1 5.0722 0.7802 1.2950 32 1 3.6519 1.2621 0.3365 33 1 0.3517 -0.2008 2.3792 34 1 1.8167 -0.6407 3.2899 35 1 1.7120 0.9425 2.4836 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710013642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:36 Heat of formation + Delta-G solvation = -36.156807 kcal Electronic energy + Delta-G solvation = -15179.509219 eV Core-core repulsion = 12791.909754 eV Total energy + Delta-G solvation = -2387.599464 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55351 -36.11470 -32.94518 -32.38622 -30.99908 -27.96237 -26.18572 -25.64885 -24.25820 -21.85413 -20.66455 -18.27451 -17.40275 -15.82136 -15.45606 -14.97974 -14.34324 -14.16620 -13.70912 -13.28735 -13.11673 -12.55747 -12.23225 -11.98159 -11.77400 -11.61377 -11.57763 -11.27863 -11.13142 -10.98045 -10.59963 -10.50082 -10.38175 -10.25421 -9.63528 -9.22754 -8.98555 -8.00719 -7.90009 -5.89600 -3.52301 3.32860 3.36114 3.40414 4.13419 4.34032 5.09395 5.13615 5.15886 5.36124 5.42334 5.44116 5.56279 5.59938 5.63590 5.81152 5.88178 5.91886 5.97187 6.04976 6.08218 6.15635 6.23640 6.36865 6.43309 6.59310 6.68772 6.82691 7.00620 7.09455 7.41852 7.43396 7.52806 8.48626 9.54024 10.25129 11.31621 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049468 B = 0.007923 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.883232 B = 3533.195701 C = 3833.174699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.041 0.959 4 C -0.106 4.106 5 C 0.099 3.901 6 O -0.286 6.286 7 C -0.355 4.355 8 H 0.061 0.939 9 C 0.021 3.979 10 N -0.889 5.889 11 Si 0.921 3.079 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.129 4.129 16 C 0.085 3.915 17 H 0.076 0.924 18 C -0.188 4.188 19 N -0.531 5.531 20 C 0.020 3.980 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.036 0.964 27 H 0.256 0.744 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 6.492 11.608 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 H 0.059 0.941 4 C -0.144 4.144 5 C 0.040 3.960 6 O -0.201 6.201 7 C -0.435 4.435 8 H 0.078 0.922 9 C -0.177 4.177 10 N -0.532 5.532 11 Si 0.749 3.251 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.168 4.168 16 C -0.024 4.024 17 H 0.094 0.906 18 C -0.247 4.247 19 N -0.255 5.255 20 C -0.128 4.128 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.109 5.739 11.361 14.118 hybrid contribution 1.316 1.291 -0.142 1.849 sum -4.792 7.031 11.219 14.081 Atomic orbital electron populations 1.21909 0.94720 1.02496 1.01178 1.21625 0.94806 0.95707 0.90514 0.94095 1.21636 0.95912 1.01531 0.95275 1.21763 0.92438 0.94254 0.87579 1.85690 1.36007 1.56740 1.41663 1.20900 0.94986 1.15936 1.11642 0.92156 1.24929 0.98720 0.96998 0.97029 1.70030 1.37726 1.22726 1.22757 0.85952 0.82280 0.78012 0.78890 1.20033 1.20932 1.20944 1.22139 1.00142 1.00519 0.93961 1.21686 0.86593 0.94654 0.99441 0.90598 1.22511 1.01967 0.98578 1.01625 1.62165 1.07025 1.54546 1.01772 1.22418 1.00323 0.97172 0.92862 0.91750 0.92921 0.92261 0.91556 0.90805 0.94635 0.93366 0.91070 0.91614 0.93241 0.92047 0.91807 0.91309 0.91917 0.95884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.77 37.16 0.33 -1.52 16 2 C 0.08 1.26 2.15 -67.72 -0.15 1.11 16 3 H 0.04 0.63 6.19 -51.93 -0.32 0.31 16 4 C -0.11 -2.03 5.03 -26.65 -0.13 -2.17 16 5 C 0.10 2.21 2.41 -26.61 -0.06 2.15 16 6 O -0.29 -8.29 9.43 -16.52 -0.16 -8.45 16 7 C -0.36 -10.53 9.78 30.88 0.30 -10.23 16 8 H 0.06 1.70 7.65 -52.49 -0.40 1.29 16 9 C 0.02 0.63 5.49 -17.51 -0.10 0.53 16 10 N -0.89 -28.30 13.68 55.48 0.76 -27.54 16 11 Si 0.92 22.37 29.55 -169.99 -5.02 17.35 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 C -0.13 -2.56 5.24 -26.64 -0.14 -2.70 16 16 C 0.08 1.33 2.93 -67.72 -0.20 1.13 16 17 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 18 C -0.19 -2.71 8.17 37.16 0.30 -2.41 16 19 N -0.53 -7.99 4.69 -226.94 -1.07 -9.06 16 20 C 0.02 0.24 8.67 60.06 0.52 0.76 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.05 0.58 6.32 -51.93 -0.33 0.25 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.04 0.79 6.22 -51.93 -0.32 0.47 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.07 1.50 8.14 -51.92 -0.42 1.07 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 0.62 6.64 -51.93 -0.34 0.27 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.99 4.80 -51.93 -0.25 0.75 16 33 H 0.07 0.74 6.21 -51.93 -0.32 0.42 16 34 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.02 0.26 6.67 -51.92 -0.35 -0.09 16 LS Contribution 269.48 15.07 4.06 4.06 Total: -1.00 -32.46 269.48 -6.32 -38.78 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.57 Total: -1.81 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 0.67 Total: -13.33 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.31 Total: -36.60 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.16 Total: -8.45 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.46 -6.32 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710013642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.624 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds