Wall clock time and date at job start Mon Mar 30 2020 04:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46289 * 2 1 4 4 C 1.53039 * 109.46046 * 240.02125 * 2 1 3 5 5 C 1.53119 * 109.27319 * 180.80420 * 4 2 1 6 6 O 1.42901 * 109.51910 * 177.55624 * 5 4 2 7 7 C 1.34934 * 116.99894 * 150.12841 * 6 5 4 8 8 H 1.07999 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.38637 * 119.99727 * 179.97438 * 7 6 5 10 10 N 1.31581 * 120.00374 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99524 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47488 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46997 * 120.00520 * 11 9 7 14 14 H 1.48505 * 109.47163 * 239.99771 * 11 9 7 15 15 C 1.53122 * 109.21622 * 57.62203 * 5 4 2 16 16 C 1.53048 * 109.27351 * 302.43991 * 15 5 4 17 17 H 1.09000 * 109.45260 * 179.12628 * 16 15 5 18 18 C 1.52998 * 109.40714 * 299.06770 * 16 15 5 19 19 N 1.46846 * 109.46130 * 119.96495 * 2 1 3 20 20 C 1.46896 * 111.00175 * 305.85502 * 19 2 1 21 21 H 1.08994 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47248 * 299.98460 * 1 2 3 23 23 H 1.09002 * 109.47137 * 59.97764 * 1 2 3 24 24 H 1.08993 * 109.50428 * 60.86609 * 4 2 1 25 25 H 1.08995 * 109.49952 * 300.74206 * 4 2 1 26 26 H 1.08996 * 109.53179 * 297.68100 * 5 4 2 27 27 H 0.96996 * 119.99866 * 179.97438 * 10 9 7 28 28 H 1.09009 * 109.50142 * 62.31364 * 15 5 4 29 29 H 1.08995 * 109.50712 * 182.42879 * 15 5 4 30 30 H 1.08995 * 109.47007 * 180.08685 * 18 16 15 31 31 H 1.09003 * 109.46933 * 300.08556 * 18 16 15 32 32 H 1.08997 * 109.47344 * 60.08458 * 18 16 15 33 33 H 1.09000 * 109.46947 * 59.99665 * 20 19 2 34 34 H 1.09001 * 109.47134 * 180.02562 * 20 19 2 35 35 H 1.09007 * 109.46953 * 300.00039 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7361 -1.2355 6 8 4.0520 -1.4577 -2.3712 7 6 5.2478 -1.0844 -2.8726 8 1 5.7955 -0.2734 -2.4158 9 6 5.7739 -1.7426 -3.9735 10 7 5.1069 -2.7311 -4.5298 11 14 7.4290 -1.2253 -4.6680 12 1 7.9707 -0.0973 -3.8685 13 1 8.3712 -2.3715 -4.6076 14 1 7.2613 -0.7964 -6.0798 15 6 4.0561 -1.4178 0.0469 16 6 3.4864 -0.6774 1.2592 17 1 3.8175 -1.1697 2.1737 18 6 3.9831 0.7697 1.2507 19 7 2.0192 -0.6915 1.1995 20 6 1.4373 -0.1102 2.4165 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5136 0.8901 23 1 -0.3633 0.5142 -0.8898 24 1 1.6895 -0.1984 -2.1399 25 1 1.6659 -1.7448 -1.2574 26 1 3.9457 0.2868 -1.2684 27 1 5.4748 -3.1913 -5.3003 28 1 3.7147 -2.4529 0.0604 29 1 5.1452 -1.3928 0.0827 30 1 3.5792 1.2975 2.1145 31 1 5.0722 0.7802 1.2950 32 1 3.6519 1.2621 0.3365 33 1 0.3517 -0.2008 2.3792 34 1 1.8167 -0.6407 3.2899 35 1 1.7120 0.9425 2.4836 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710013642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:36 Heat of formation + Delta-G solvation = -59.133615 kcal Electronic energy + Delta-G solvation = -15180.505568 eV Core-core repulsion = 12791.909754 eV Total energy + Delta-G solvation = -2388.595814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92762 -38.05312 -34.34902 -34.14676 -32.85288 -29.23115 -27.57216 -27.02875 -26.22401 -23.27060 -22.13309 -19.89213 -19.34043 -17.60541 -16.66568 -16.60985 -16.01689 -15.62845 -15.12201 -14.83397 -14.72726 -14.10154 -13.51453 -13.39598 -13.27156 -13.02637 -12.94120 -12.78135 -12.63946 -12.50169 -12.15447 -12.06887 -12.05086 -11.72336 -11.25693 -11.02106 -10.99229 -10.07880 -9.15240 -8.16259 -5.84795 1.37915 1.43781 1.54222 2.32601 2.96981 3.16191 3.57265 3.83494 3.91305 4.06387 4.24545 4.29039 4.41191 4.47111 4.48625 4.60213 4.65369 4.68987 4.83977 4.88060 4.95758 5.03610 5.09419 5.12220 5.13837 5.17400 5.25748 5.34310 5.38523 5.50271 6.19694 6.22768 6.28672 7.26793 8.10654 9.09142 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049468 B = 0.007923 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.883232 B = 3533.195701 C = 3833.174699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.046 0.954 4 C -0.101 4.101 5 C 0.090 3.910 6 O -0.331 6.331 7 C -0.368 4.368 8 H 0.068 0.932 9 C -0.045 4.045 10 N -0.941 5.941 11 Si 1.002 2.998 12 H -0.258 1.258 13 H -0.276 1.276 14 H -0.275 1.275 15 C -0.122 4.122 16 C 0.092 3.908 17 H 0.095 0.905 18 C -0.182 4.182 19 N -0.545 5.545 20 C 0.020 3.980 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.259 0.741 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 8.097 13.255 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 H 0.064 0.936 4 C -0.139 4.139 5 C 0.031 3.969 6 O -0.247 6.247 7 C -0.447 4.447 8 H 0.086 0.914 9 C -0.238 4.238 10 N -0.587 5.587 11 Si 0.825 3.175 12 H -0.182 1.182 13 H -0.201 1.201 14 H -0.201 1.201 15 C -0.160 4.160 16 C -0.017 4.017 17 H 0.113 0.887 18 C -0.241 4.241 19 N -0.270 5.270 20 C -0.127 4.127 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.027 7.364 13.045 16.147 hybrid contribution 1.215 0.783 -0.595 1.563 sum -4.811 8.147 12.450 15.637 Atomic orbital electron populations 1.21874 0.92328 1.02670 1.02842 1.21539 0.96573 0.95030 0.88801 0.93583 1.21616 0.93728 1.00938 0.97624 1.22104 0.94284 0.93716 0.86768 1.85620 1.36138 1.58663 1.44288 1.21353 0.95396 1.16032 1.11885 0.91392 1.26200 1.03386 0.96921 0.97279 1.70208 1.40317 1.24481 1.23657 0.84738 0.76422 0.78202 0.78158 1.18157 1.20146 1.20092 1.21999 0.99432 0.99684 0.94929 1.21581 0.87334 0.95122 0.97654 0.88711 1.22442 1.02085 0.97501 1.02041 1.62116 1.06456 1.55475 1.02942 1.22515 1.01057 0.97737 0.91369 0.92324 0.90262 0.91634 0.92375 0.92747 0.94788 0.93178 0.93252 0.92953 0.90502 0.92031 0.93324 0.89878 0.90651 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.77 71.98 0.63 -2.59 16 2 C 0.09 2.61 2.15 44.94 0.10 2.70 16 3 H 0.05 1.33 6.19 -2.38 -0.01 1.31 16 4 C -0.10 -3.98 5.03 30.65 0.15 -3.83 16 5 C 0.09 4.13 2.41 30.67 0.07 4.20 16 6 O -0.33 -20.05 9.43 -82.04 -0.77 -20.82 16 7 C -0.37 -22.37 9.78 67.92 0.66 -21.70 16 8 H 0.07 3.88 7.65 -2.91 -0.02 3.86 16 9 C -0.05 -2.75 5.49 84.83 0.47 -2.28 16 10 N -0.94 -61.71 13.68 21.61 0.30 -61.41 16 11 Si 1.00 46.26 29.55 68.60 2.03 48.29 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 15 C -0.12 -4.93 5.24 30.65 0.16 -4.77 16 16 C 0.09 2.74 2.93 44.94 0.13 2.87 16 17 H 0.09 2.51 8.09 -2.39 -0.02 2.49 16 18 C -0.18 -4.84 8.17 71.98 0.59 -4.25 16 19 N -0.55 -15.25 4.69 -871.89 -4.09 -19.35 16 20 C 0.02 0.40 8.67 127.69 1.11 1.51 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.08 1.43 6.32 -2.39 -0.02 1.41 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.03 1.56 6.22 -2.39 -0.01 1.54 16 27 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 1.63 6.64 -2.39 -0.02 1.62 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.44 4.80 -2.39 -0.01 1.43 16 33 H 0.08 1.43 6.21 -2.39 -0.01 1.42 16 34 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.03 0.62 6.67 -2.38 -0.02 0.60 16 Total: -1.00 -72.18 269.48 2.58 -69.60 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.05 Total: 11.83 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 4.07 Total: -28.14 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -3.80 Total: -80.76 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.77 Total: -20.82 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.18 2.58 -69.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710013642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.469 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds