Wall clock time and date at job start Mon Mar 30 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47279 * 2 1 4 4 N 1.46504 * 109.47229 * 120.00245 * 2 1 3 5 5 C 1.36932 * 119.99688 * 302.43055 * 4 2 1 6 6 H 1.08002 * 120.00417 * 321.58545 * 5 4 2 7 7 C 1.38817 * 120.00001 * 141.59138 * 5 4 2 8 8 N 1.31619 * 119.99921 * 338.59442 * 7 5 4 9 9 Si 1.86794 * 120.00165 * 158.59903 * 7 5 4 10 10 H 1.48503 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47498 * 119.99686 * 9 7 5 12 12 H 1.48503 * 109.47425 * 239.99827 * 9 7 5 13 13 C 1.46497 * 119.99979 * 122.15172 * 4 2 1 14 14 C 1.53004 * 109.46806 * 90.00371 * 13 4 2 15 15 O 1.42891 * 109.47400 * 64.99799 * 14 13 4 16 16 C 1.42900 * 114.00219 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.50271 * 218.62170 * 16 15 14 18 18 C 1.53003 * 60.00172 * 252.51214 * 17 16 15 19 19 H 1.09005 * 109.46884 * 305.40837 * 1 2 3 20 20 H 1.09000 * 109.47151 * 65.41180 * 1 2 3 21 21 H 1.08999 * 109.47400 * 185.41592 * 1 2 3 22 22 H 1.08999 * 109.46696 * 239.99759 * 2 1 3 23 23 H 1.09001 * 109.47036 * 180.49876 * 3 2 1 24 24 H 1.08996 * 109.47310 * 300.50520 * 3 2 1 25 25 H 1.09006 * 109.47278 * 60.50178 * 3 2 1 26 26 H 0.97002 * 120.00094 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.47049 * 209.99917 * 13 4 2 28 28 H 1.09005 * 109.47415 * 329.99947 * 13 4 2 29 29 H 1.09000 * 109.46992 * 185.00248 * 14 13 4 30 30 H 1.09002 * 109.47044 * 304.99359 * 14 13 4 31 31 H 1.08993 * 115.54904 * 4.33261 * 16 15 14 32 32 H 1.09008 * 117.49876 * 0.02562 * 17 16 15 33 33 H 1.08998 * 117.50342 * 145.02009 * 17 16 15 34 34 H 1.08998 * 117.49712 * 252.51105 * 18 17 16 35 35 H 1.08997 * 117.51722 * 107.48041 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6470 -0.2526 2.4392 6 1 1.5662 0.8061 2.6369 7 6 1.3745 -1.1693 3.4454 8 7 1.0581 -2.4093 3.1380 9 14 1.4568 -0.6429 5.2358 10 1 1.8322 0.7918 5.3133 11 1 0.1300 -0.8429 5.8721 12 1 2.4742 -1.4593 5.9456 13 6 2.8991 -1.8537 1.0622 14 6 4.3571 -1.3901 1.0470 15 8 4.6860 -0.8104 2.3109 16 6 6.0332 -0.3429 2.4032 17 6 6.7653 -0.5549 3.7298 18 6 6.3063 0.8474 3.3249 19 1 -0.3633 0.5955 0.8376 20 1 -0.3633 0.4276 -0.9345 21 1 -0.3634 -1.0230 0.0970 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0089 24 1 1.6694 1.9589 -0.8854 25 1 1.6841 1.9537 0.8945 26 1 0.8673 -3.0498 3.8411 27 1 2.7411 -2.5279 1.9038 28 1 2.6737 -2.3749 0.1318 29 1 5.0079 -2.2439 0.8584 30 1 4.4943 -0.6482 0.2602 31 1 6.6195 -0.4151 1.4873 32 1 6.2195 -1.0514 4.5322 33 1 7.8337 -0.7668 3.6868 34 1 7.0727 1.5580 3.0155 35 1 5.4584 1.2740 3.8607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711738588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:40 Heat of formation + Delta-G solvation = 0.177626 kcal Electronic energy + Delta-G solvation = -15208.168959 eV Core-core repulsion = 12822.145074 eV Total energy + Delta-G solvation = -2386.023885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -37.87145 -36.37575 -34.22032 -32.18643 -30.20014 -27.31796 -26.10890 -23.92392 -22.02170 -21.33964 -21.16320 -19.41171 -16.59025 -16.09714 -14.83303 -14.64480 -14.54352 -13.83713 -13.42881 -13.22656 -12.65290 -12.39505 -11.82814 -11.34170 -11.26530 -11.21746 -11.13591 -10.84466 -10.72723 -10.60218 -10.25198 -10.11865 -10.01219 -9.78857 -9.66363 -9.39797 -8.36209 -8.28483 -6.39607 -5.61289 -3.16293 3.48212 3.56115 3.59640 4.26849 4.27832 4.64773 5.19309 5.35585 5.43870 5.55018 5.69744 5.84447 5.93308 6.01629 6.12376 6.19467 6.25662 6.32010 6.43775 6.49667 6.52742 6.63980 6.75069 6.81279 6.87744 6.90280 7.27716 7.41901 7.71984 8.01190 8.15348 8.71583 9.36101 10.00168 10.57103 11.40517 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.014454 C = 0.010421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.323205 B = 1936.654046 C = 2686.137829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 C -0.152 4.152 4 N -0.574 5.574 5 C -0.228 4.228 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.295 1.295 12 H -0.290 1.290 13 C 0.144 3.856 14 C 0.049 3.951 15 O -0.316 6.316 16 C 0.021 3.979 17 C -0.199 4.199 18 C -0.189 4.189 19 H 0.053 0.947 20 H 0.027 0.973 21 H 0.051 0.949 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.250 0.750 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 3.180 -4.167 9.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.055 3.945 3 C -0.211 4.211 4 N -0.294 5.294 5 C -0.358 4.358 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.217 1.217 13 C 0.017 3.983 14 C -0.030 4.030 15 O -0.233 6.233 16 C -0.039 4.039 17 C -0.236 4.236 18 C -0.226 4.226 19 H 0.073 0.927 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.119 0.881 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.150 3.057 -3.921 8.708 hybrid contribution 0.375 0.220 0.858 0.961 sum 7.524 3.277 -3.063 8.760 Atomic orbital electron populations 1.22062 0.97880 1.01553 0.98896 1.20416 0.92461 0.91855 0.89769 1.22168 1.00067 0.98995 0.99917 1.43775 1.51744 1.32728 1.01152 1.18763 1.39478 0.91027 0.86515 0.92738 1.25022 0.98643 0.96318 0.98306 1.69987 1.48347 1.04216 1.31281 0.86398 0.76785 0.78259 0.86285 1.20347 1.22266 1.21668 1.21011 0.84473 0.91428 1.01366 1.23544 1.00330 0.94558 0.84601 1.88201 1.23096 1.77734 1.34272 1.22591 0.87359 1.00494 0.93420 1.23321 0.99679 1.00034 1.00562 1.23239 1.03139 0.91379 1.04845 0.92740 0.95366 0.93008 0.93917 0.93972 0.94740 0.92744 0.94009 0.88132 0.94171 0.95658 0.95245 0.88577 0.88485 0.89162 0.89112 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.03 37.16 0.34 -2.66 16 2 C 0.16 3.43 3.36 -67.93 -0.23 3.21 16 3 C -0.15 -2.93 9.20 37.15 0.34 -2.59 16 4 N -0.57 -14.15 2.34 -165.66 -0.39 -14.54 16 5 C -0.23 -6.24 7.75 -15.06 -0.12 -6.36 16 6 H 0.06 1.54 6.95 -52.49 -0.37 1.18 16 7 C 0.02 0.45 4.94 -17.43 -0.09 0.37 16 8 N -0.89 -26.13 11.52 55.49 0.64 -25.49 16 9 Si 0.89 22.73 29.60 -169.99 -5.03 17.70 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 13 C 0.14 3.38 5.69 -4.04 -0.02 3.36 16 14 C 0.05 1.00 6.15 37.16 0.23 1.23 16 15 O -0.32 -7.06 10.08 -35.23 -0.36 -7.41 16 16 C 0.02 0.36 6.44 -26.73 -0.17 0.19 16 17 C -0.20 -3.13 10.48 -26.73 -0.28 -3.41 16 18 C -0.19 -3.03 10.48 -26.73 -0.28 -3.31 16 19 H 0.05 1.20 7.79 -51.93 -0.40 0.79 16 20 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 22 H 0.04 0.84 7.78 -51.93 -0.40 0.44 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.12 7.07 -51.93 -0.37 0.76 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.10 2.72 5.56 -51.93 -0.29 2.43 16 28 H 0.04 0.87 7.90 -51.93 -0.41 0.46 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 1.46 7.93 -51.93 -0.41 1.05 16 32 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 289.12 15.07 4.36 4.36 Total: -1.00 -29.59 289.12 -7.07 -36.66 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.01 Total: -1.30 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.28 Total: -9.98 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.25 Total: -40.03 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.36 Total: -7.41 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.59 -7.07 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711738588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.843 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds