Wall clock time and date at job start Mon Mar 30 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47279 * 2 1 4 4 N 1.46504 * 109.47229 * 120.00245 * 2 1 3 5 5 C 1.36932 * 119.99688 * 302.43055 * 4 2 1 6 6 H 1.08002 * 120.00417 * 321.58545 * 5 4 2 7 7 C 1.38817 * 120.00001 * 141.59138 * 5 4 2 8 8 N 1.31619 * 119.99921 * 338.59442 * 7 5 4 9 9 Si 1.86794 * 120.00165 * 158.59903 * 7 5 4 10 10 H 1.48503 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47498 * 119.99686 * 9 7 5 12 12 H 1.48503 * 109.47425 * 239.99827 * 9 7 5 13 13 C 1.46497 * 119.99979 * 122.15172 * 4 2 1 14 14 C 1.53004 * 109.46806 * 90.00371 * 13 4 2 15 15 O 1.42891 * 109.47400 * 64.99799 * 14 13 4 16 16 C 1.42900 * 114.00219 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.50271 * 218.62170 * 16 15 14 18 18 C 1.53003 * 60.00172 * 252.51214 * 17 16 15 19 19 H 1.09005 * 109.46884 * 305.40837 * 1 2 3 20 20 H 1.09000 * 109.47151 * 65.41180 * 1 2 3 21 21 H 1.08999 * 109.47400 * 185.41592 * 1 2 3 22 22 H 1.08999 * 109.46696 * 239.99759 * 2 1 3 23 23 H 1.09001 * 109.47036 * 180.49876 * 3 2 1 24 24 H 1.08996 * 109.47310 * 300.50520 * 3 2 1 25 25 H 1.09006 * 109.47278 * 60.50178 * 3 2 1 26 26 H 0.97002 * 120.00094 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.47049 * 209.99917 * 13 4 2 28 28 H 1.09005 * 109.47415 * 329.99947 * 13 4 2 29 29 H 1.09000 * 109.46992 * 185.00248 * 14 13 4 30 30 H 1.09002 * 109.47044 * 304.99359 * 14 13 4 31 31 H 1.08993 * 115.54904 * 4.33261 * 16 15 14 32 32 H 1.09008 * 117.49876 * 0.02562 * 17 16 15 33 33 H 1.08998 * 117.50342 * 145.02009 * 17 16 15 34 34 H 1.08998 * 117.49712 * 252.51105 * 18 17 16 35 35 H 1.08997 * 117.51722 * 107.48041 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6470 -0.2526 2.4392 6 1 1.5662 0.8061 2.6369 7 6 1.3745 -1.1693 3.4454 8 7 1.0581 -2.4093 3.1380 9 14 1.4568 -0.6429 5.2358 10 1 1.8322 0.7918 5.3133 11 1 0.1300 -0.8429 5.8721 12 1 2.4742 -1.4593 5.9456 13 6 2.8991 -1.8537 1.0622 14 6 4.3571 -1.3901 1.0470 15 8 4.6860 -0.8104 2.3109 16 6 6.0332 -0.3429 2.4032 17 6 6.7653 -0.5549 3.7298 18 6 6.3063 0.8474 3.3249 19 1 -0.3633 0.5955 0.8376 20 1 -0.3633 0.4276 -0.9345 21 1 -0.3634 -1.0230 0.0970 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0089 24 1 1.6694 1.9589 -0.8854 25 1 1.6841 1.9537 0.8945 26 1 0.8673 -3.0498 3.8411 27 1 2.7411 -2.5279 1.9038 28 1 2.6737 -2.3749 0.1318 29 1 5.0079 -2.2439 0.8584 30 1 4.4943 -0.6482 0.2602 31 1 6.6195 -0.4151 1.4873 32 1 6.2195 -1.0514 4.5322 33 1 7.8337 -0.7668 3.6868 34 1 7.0727 1.5580 3.0155 35 1 5.4584 1.2740 3.8607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711738588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:40 Heat of formation + Delta-G solvation = -17.061247 kcal Electronic energy + Delta-G solvation = -15208.916493 eV Core-core repulsion = 12822.145074 eV Total energy + Delta-G solvation = -2386.771419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.38077 -38.10500 -35.68861 -34.14995 -32.04015 -29.18628 -27.72811 -25.89069 -23.26415 -22.89262 -22.68988 -21.25725 -18.29812 -17.83164 -16.75952 -16.30705 -16.01965 -15.69704 -15.13860 -14.71271 -14.38391 -14.10913 -13.42407 -13.16908 -13.02357 -12.93690 -12.70901 -12.49101 -12.41260 -12.34410 -12.06777 -11.78456 -11.71045 -11.49771 -11.25288 -11.18936 -10.39871 -9.81104 -8.42104 -7.70919 -5.28755 1.41184 1.45926 1.53558 2.56928 2.86773 2.99212 3.39204 3.68336 3.94829 4.12276 4.28202 4.36527 4.50358 4.59715 4.64139 4.71838 4.74201 4.81163 4.92591 4.97288 5.00655 5.04163 5.20121 5.22030 5.22922 5.26862 5.63239 5.70407 5.76889 5.88180 6.55714 6.72941 7.31073 8.01375 8.51624 9.25733 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.014454 C = 0.010421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.323205 B = 1936.654046 C = 2686.137829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.152 3.848 3 C -0.140 4.140 4 N -0.587 5.587 5 C -0.215 4.215 6 H 0.042 0.958 7 C -0.030 4.030 8 N -0.921 5.921 9 Si 0.937 3.063 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.297 1.297 13 C 0.140 3.860 14 C 0.059 3.941 15 O -0.360 6.360 16 C -0.001 4.001 17 C -0.190 4.190 18 C -0.185 4.185 19 H 0.032 0.968 20 H 0.066 0.934 21 H 0.026 0.974 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.245 0.755 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.126 0.874 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 4.214 -5.499 11.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 C -0.199 4.199 4 N -0.308 5.308 5 C -0.347 4.347 6 H 0.059 0.941 7 C -0.226 4.226 8 N -0.567 5.567 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.225 1.225 13 C 0.014 3.986 14 C -0.019 4.019 15 O -0.279 6.279 16 C -0.060 4.060 17 C -0.227 4.227 18 C -0.223 4.223 19 H 0.051 0.949 20 H 0.085 0.915 21 H 0.045 0.955 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.656 4.111 -5.266 10.934 hybrid contribution -0.061 -0.065 1.209 1.212 sum 8.595 4.046 -4.057 10.330 Atomic orbital electron populations 1.21961 0.97637 0.99836 1.00027 1.20675 0.92713 0.92911 0.89073 1.22014 0.99920 0.97493 1.00468 1.43973 1.52403 1.33078 1.01368 1.18762 1.37626 0.90312 0.87952 0.94063 1.25492 0.99733 0.96582 1.00776 1.70088 1.50240 1.04853 1.31520 0.85681 0.76355 0.77771 0.83449 1.20053 1.22129 1.22481 1.20958 0.86546 0.90747 1.00392 1.23300 0.98421 0.95670 0.84539 1.88118 1.26153 1.78413 1.35170 1.22967 0.85894 1.01723 0.95382 1.23377 1.01217 0.99423 0.98661 1.23297 1.03091 0.91929 1.03935 0.94862 0.91499 0.95487 0.91873 0.94047 0.91312 0.94923 0.94596 0.91969 0.92782 0.93346 0.93902 0.85677 0.90850 0.85529 0.85636 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 9.03 71.98 0.65 -4.79 16 2 C 0.15 6.19 3.36 44.99 0.15 6.34 16 3 C -0.14 -5.06 9.20 71.98 0.66 -4.40 16 4 N -0.59 -28.81 2.34 -678.03 -1.59 -30.39 16 5 C -0.22 -11.95 7.75 84.04 0.65 -11.30 16 6 H 0.04 2.38 6.95 -2.91 -0.02 2.36 16 7 C -0.03 -1.72 4.94 84.86 0.42 -1.30 16 8 N -0.92 -55.25 11.52 21.65 0.25 -55.00 16 9 Si 0.94 47.78 29.60 68.60 2.03 49.81 16 10 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 11 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 13 C 0.14 6.54 5.69 86.38 0.49 7.03 16 14 C 0.06 2.34 6.15 71.98 0.44 2.78 16 15 O -0.36 -15.87 10.08 -148.98 -1.50 -17.37 16 16 C 0.00 -0.05 6.44 30.60 0.20 0.15 16 17 C -0.19 -5.59 10.48 30.59 0.32 -5.26 16 18 C -0.19 -5.58 10.48 30.60 0.32 -5.26 16 19 H 0.03 1.44 7.79 -2.38 -0.02 1.42 16 20 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 21 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 2.32 7.78 -2.39 -0.02 2.30 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.03 1.30 7.07 -2.38 -0.02 1.28 16 26 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.06 3.44 5.56 -2.39 -0.01 3.43 16 28 H 0.05 2.30 7.90 -2.38 -0.02 2.28 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.13 3.35 7.93 -2.39 -0.02 3.33 16 32 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.13 2.86 8.14 -2.39 -0.02 2.85 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -64.75 289.12 4.53 -60.22 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.03 Total: 8.74 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 4.31 Total: -16.01 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.34 Total: -85.39 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.50 Total: -17.37 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -64.75 4.53 -60.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711738588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.159 kcal (2) G-P(sol) polarization free energy of solvation -64.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds