Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47146 * 2 1 4 4 N 1.46500 * 109.47080 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99706 * 269.78658 * 4 3 2 6 6 H 1.08003 * 120.00130 * 325.67670 * 5 4 3 7 7 C 1.38813 * 119.99841 * 145.66657 * 5 4 3 8 8 N 1.31616 * 120.00166 * 336.79637 * 7 5 4 9 9 Si 1.86808 * 119.99622 * 156.79477 * 7 5 4 10 10 H 1.48497 * 109.46976 * 60.00163 * 9 7 5 11 11 H 1.48498 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46992 * 300.00386 * 9 7 5 13 13 C 1.46495 * 120.00622 * 89.51770 * 4 3 2 14 14 C 1.52993 * 109.47644 * 89.99688 * 13 4 3 15 15 O 1.42898 * 109.47011 * 65.00241 * 14 13 4 16 16 C 1.42904 * 114.00146 * 180.02562 * 15 14 13 17 17 C 1.52995 * 117.49775 * 218.62241 * 16 15 14 18 18 C 1.52991 * 60.00093 * 252.50802 * 17 16 15 19 19 H 1.09007 * 109.47023 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47061 * 299.99829 * 1 2 3 21 21 H 1.08993 * 109.47515 * 59.99732 * 1 2 3 22 22 H 1.09000 * 109.46544 * 240.00071 * 2 1 3 23 23 H 1.09007 * 109.47273 * 120.00305 * 2 1 3 24 24 H 1.09000 * 109.47341 * 60.00560 * 3 2 1 25 25 H 1.09007 * 109.47284 * 300.00299 * 3 2 1 26 26 H 0.97005 * 119.99689 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47155 * 210.00268 * 13 4 3 28 28 H 1.09000 * 109.46703 * 329.99357 * 13 4 3 29 29 H 1.08998 * 109.47624 * 185.00410 * 14 13 4 30 30 H 1.09002 * 109.47209 * 305.00454 * 14 13 4 31 31 H 1.09004 * 115.54895 * 4.32634 * 16 15 14 32 32 H 1.09001 * 117.50086 * 359.97438 * 17 16 15 33 33 H 1.09003 * 117.49932 * 145.01428 * 17 16 15 34 34 H 1.09006 * 117.50309 * 252.51273 * 18 17 16 35 35 H 1.09001 * 117.52495 * 107.48362 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.4466 1.1851 6 1 3.7915 1.9771 2.0372 7 6 5.3969 0.7690 1.2917 8 7 5.6703 -0.2217 0.4695 9 14 6.6329 1.2632 2.6024 10 1 6.0171 1.1129 3.9453 11 1 7.8313 0.3915 2.5064 12 1 7.0330 2.6784 2.3969 13 6 4.2371 1.4319 -1.2695 14 6 4.4919 2.8706 -1.7233 15 8 5.3607 3.5173 -0.7911 16 6 5.6637 4.8737 -1.1233 17 6 7.0907 5.3620 -0.8668 18 6 5.9466 5.8375 0.0307 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8932 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 6.5138 -0.6950 0.5438 27 1 5.1895 0.9191 -1.1352 28 1 3.6477 0.9117 -2.0246 29 1 4.9571 2.8637 -2.7090 30 1 3.5456 3.4093 -1.7719 31 1 5.1445 5.2713 -1.9954 32 1 7.7984 4.6487 -0.4441 33 1 7.5108 6.0809 -1.5702 34 1 5.6138 6.8693 -0.0822 35 1 5.9011 5.4371 1.0435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711742474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = -3.378564 kcal Electronic energy + Delta-G solvation = -14906.839946 eV Core-core repulsion = 12520.661853 eV Total energy + Delta-G solvation = -2386.178093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.83872 -36.10935 -34.16945 -32.66466 -30.65331 -28.10440 -25.41380 -23.06658 -22.00681 -21.32533 -21.21361 -19.63143 -16.68232 -16.40781 -14.73983 -14.59890 -14.51551 -14.05426 -13.77607 -13.17767 -12.79400 -12.70887 -12.10598 -11.44510 -11.27496 -11.17081 -10.98291 -10.84396 -10.71301 -10.59942 -10.29783 -10.08073 -10.04145 -9.74592 -9.65937 -9.57067 -8.35460 -8.30424 -6.47190 -5.62316 -3.13452 3.49885 3.54653 3.61259 4.28283 4.29394 4.65833 5.20575 5.37781 5.49096 5.52523 5.69102 5.80003 5.85422 5.89206 5.94454 6.10137 6.14877 6.31657 6.35355 6.37254 6.52841 6.54769 6.58199 6.70290 6.78972 6.84279 7.12097 7.33341 7.76639 7.96540 8.16423 8.67118 9.33373 9.99265 10.53046 11.39424 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.012170 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.312200 B = 2300.168672 C = 3146.635728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.236 4.236 6 H 0.056 0.944 7 C 0.015 3.985 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.282 1.282 13 C 0.139 3.861 14 C 0.049 3.951 15 O -0.315 6.315 16 C 0.020 3.980 17 C -0.198 4.198 18 C -0.189 4.189 19 H 0.041 0.959 20 H 0.046 0.954 21 H 0.043 0.957 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.029 0.971 26 H 0.252 0.748 27 H 0.108 0.892 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 6.829 -4.386 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.366 4.366 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.212 1.212 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.012 3.988 14 C -0.030 4.030 15 O -0.232 6.232 16 C -0.039 4.039 17 C -0.235 4.235 18 C -0.226 4.226 19 H 0.060 0.940 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.125 0.875 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.816 6.616 -4.214 8.334 hybrid contribution 0.646 0.397 0.396 0.856 sum -2.169 7.014 -3.817 8.275 Atomic orbital electron populations 1.21760 0.97923 1.00220 1.00594 1.22117 0.92898 1.01047 1.02056 1.20928 0.85645 0.93285 0.97970 1.43774 0.99061 1.84770 1.02258 1.18847 1.02831 1.24593 0.90300 0.92611 1.24903 1.00339 0.95099 0.98012 1.69946 1.23802 1.19811 1.40270 0.86508 0.81235 0.78408 0.81440 1.21239 1.22017 1.20819 1.21061 1.00732 0.90397 0.86637 1.23494 0.91017 0.98035 0.90422 1.88219 1.66444 1.20369 1.48209 1.22600 0.97255 0.86278 0.97803 1.23312 0.92966 1.03609 1.03658 1.23238 1.03081 0.98551 0.97747 0.93958 0.93464 0.93767 0.93152 0.91861 0.94084 0.95271 0.93841 0.87469 0.94239 0.95552 0.95358 0.88547 0.88508 0.89154 0.89103 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.14 -2.83 6.26 -26.73 -0.17 -2.99 16 3 C 0.15 3.18 5.67 -4.05 -0.02 3.15 16 4 N -0.58 -14.60 2.43 -173.25 -0.42 -15.02 16 5 C -0.24 -6.61 9.00 -15.06 -0.14 -6.75 16 6 H 0.06 1.59 7.93 -52.48 -0.42 1.17 16 7 C 0.02 0.43 4.94 -17.43 -0.09 0.35 16 8 N -0.89 -26.27 11.34 55.49 0.63 -25.64 16 9 Si 0.89 22.78 29.61 -169.99 -5.03 17.74 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 12 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 13 C 0.14 3.30 5.72 -4.05 -0.02 3.28 16 14 C 0.05 1.03 6.15 37.15 0.23 1.26 16 15 O -0.32 -7.16 10.08 -35.23 -0.36 -7.52 16 16 C 0.02 0.36 6.44 -26.74 -0.17 0.19 16 17 C -0.20 -3.18 10.48 -26.74 -0.28 -3.46 16 18 C -0.19 -3.09 10.48 -26.74 -0.28 -3.37 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 23 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 24 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 25 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.11 2.94 5.33 -51.93 -0.28 2.66 16 28 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.48 7.93 -51.93 -0.41 1.07 16 32 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 293.08 15.07 4.42 4.42 Total: -1.00 -29.97 293.08 -7.48 -37.45 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.15 Total: -1.13 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.57 Total: -10.30 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.21 Total: -40.66 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.36 Total: -7.52 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.97 -7.48 -37.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711742474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.075 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds