Wall clock time and date at job start Mon Mar 30 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47146 * 2 1 4 4 N 1.46500 * 109.47080 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99706 * 269.78658 * 4 3 2 6 6 H 1.08003 * 120.00130 * 325.67670 * 5 4 3 7 7 C 1.38813 * 119.99841 * 145.66657 * 5 4 3 8 8 N 1.31616 * 120.00166 * 336.79637 * 7 5 4 9 9 Si 1.86808 * 119.99622 * 156.79477 * 7 5 4 10 10 H 1.48497 * 109.46976 * 60.00163 * 9 7 5 11 11 H 1.48498 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46992 * 300.00386 * 9 7 5 13 13 C 1.46495 * 120.00622 * 89.51770 * 4 3 2 14 14 C 1.52993 * 109.47644 * 89.99688 * 13 4 3 15 15 O 1.42898 * 109.47011 * 65.00241 * 14 13 4 16 16 C 1.42904 * 114.00146 * 180.02562 * 15 14 13 17 17 C 1.52995 * 117.49775 * 218.62241 * 16 15 14 18 18 C 1.52991 * 60.00093 * 252.50802 * 17 16 15 19 19 H 1.09007 * 109.47023 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47061 * 299.99829 * 1 2 3 21 21 H 1.08993 * 109.47515 * 59.99732 * 1 2 3 22 22 H 1.09000 * 109.46544 * 240.00071 * 2 1 3 23 23 H 1.09007 * 109.47273 * 120.00305 * 2 1 3 24 24 H 1.09000 * 109.47341 * 60.00560 * 3 2 1 25 25 H 1.09007 * 109.47284 * 300.00299 * 3 2 1 26 26 H 0.97005 * 119.99689 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47155 * 210.00268 * 13 4 3 28 28 H 1.09000 * 109.46703 * 329.99357 * 13 4 3 29 29 H 1.08998 * 109.47624 * 185.00410 * 14 13 4 30 30 H 1.09002 * 109.47209 * 305.00454 * 14 13 4 31 31 H 1.09004 * 115.54895 * 4.32634 * 16 15 14 32 32 H 1.09001 * 117.50086 * 359.97438 * 17 16 15 33 33 H 1.09003 * 117.49932 * 145.01428 * 17 16 15 34 34 H 1.09006 * 117.50309 * 252.51273 * 18 17 16 35 35 H 1.09001 * 117.52495 * 107.48362 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.4466 1.1851 6 1 3.7915 1.9771 2.0372 7 6 5.3969 0.7690 1.2917 8 7 5.6703 -0.2217 0.4695 9 14 6.6329 1.2632 2.6024 10 1 6.0171 1.1129 3.9453 11 1 7.8313 0.3915 2.5064 12 1 7.0330 2.6784 2.3969 13 6 4.2371 1.4319 -1.2695 14 6 4.4919 2.8706 -1.7233 15 8 5.3607 3.5173 -0.7911 16 6 5.6637 4.8737 -1.1233 17 6 7.0907 5.3620 -0.8668 18 6 5.9466 5.8375 0.0307 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8932 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 6.5138 -0.6950 0.5438 27 1 5.1895 0.9191 -1.1352 28 1 3.6477 0.9117 -2.0246 29 1 4.9571 2.8637 -2.7090 30 1 3.5456 3.4093 -1.7719 31 1 5.1445 5.2713 -1.9954 32 1 7.7984 4.6487 -0.4441 33 1 7.5108 6.0809 -1.5702 34 1 5.6138 6.8693 -0.0822 35 1 5.9011 5.4371 1.0435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711742474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:44 Heat of formation + Delta-G solvation = -20.741811 kcal Electronic energy + Delta-G solvation = -14907.592873 eV Core-core repulsion = 12520.661853 eV Total energy + Delta-G solvation = -2386.931020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.35891 -37.87170 -35.66081 -34.47444 -32.57144 -29.86834 -27.25427 -24.87352 -23.27214 -22.90486 -22.69576 -21.42603 -18.66709 -17.94838 -16.71635 -16.24557 -16.05441 -15.70648 -15.52609 -14.75954 -14.43612 -14.36139 -13.69144 -13.18874 -13.07977 -12.68270 -12.55045 -12.46315 -12.44417 -12.39107 -11.96718 -11.86180 -11.63770 -11.58553 -11.30781 -11.25221 -10.43315 -9.82314 -8.52230 -7.74964 -5.28869 1.42299 1.47259 1.53849 2.56524 2.86204 2.98364 3.35843 3.71711 3.94154 4.11759 4.25821 4.30425 4.45349 4.50331 4.61477 4.69248 4.73155 4.78961 4.84467 4.88440 4.97302 5.01590 5.04093 5.23143 5.26347 5.29450 5.48565 5.63465 5.71781 5.87873 6.49368 6.71508 7.25353 7.96919 8.44610 9.22050 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.012170 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.312200 B = 2300.168672 C = 3146.635728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.145 3.855 4 N -0.594 5.594 5 C -0.236 4.236 6 H 0.044 0.956 7 C -0.028 4.028 8 N -0.919 5.919 9 Si 0.942 3.058 10 H -0.278 1.278 11 H -0.295 1.295 12 H -0.288 1.288 13 C 0.136 3.864 14 C 0.059 3.941 15 O -0.360 6.360 16 C -0.003 4.003 17 C -0.189 4.189 18 C -0.186 4.186 19 H 0.055 0.945 20 H 0.054 0.946 21 H 0.064 0.936 22 H 0.038 0.962 23 H 0.028 0.972 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.247 0.753 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 8.428 -5.303 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.020 3.980 4 N -0.315 5.315 5 C -0.367 4.367 6 H 0.062 0.938 7 C -0.224 4.224 8 N -0.565 5.565 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.221 1.221 12 H -0.215 1.215 13 C 0.009 3.991 14 C -0.020 4.020 15 O -0.279 6.279 16 C -0.061 4.061 17 C -0.226 4.226 18 C -0.223 4.223 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.778 8.225 -5.132 10.404 hybrid contribution 0.905 -0.053 0.661 1.122 sum -2.873 8.172 -4.470 9.747 Atomic orbital electron populations 1.21657 0.94124 1.01637 1.02005 1.21954 0.96164 0.99398 0.99736 1.21061 0.83618 0.94312 0.99001 1.43973 1.00618 1.85016 1.01870 1.18938 1.03225 1.23478 0.91031 0.93784 1.25408 1.01693 0.95449 0.99878 1.70063 1.23779 1.20837 1.41798 0.85735 0.79556 0.77428 0.80106 1.20397 1.22111 1.21500 1.20999 0.99069 0.92465 0.86537 1.23269 0.91828 0.95939 0.90941 1.88134 1.67035 1.23105 1.49597 1.22993 0.98997 0.84513 0.99587 1.23371 0.91859 1.03463 1.03891 1.23296 1.03246 0.99918 0.95874 0.92609 0.92654 0.91715 0.94320 0.95351 0.94350 0.92729 0.94405 0.91151 0.92930 0.93111 0.93963 0.85496 0.90960 0.85378 0.85488 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.24 16 2 C -0.13 -5.22 6.26 30.59 0.19 -5.03 16 3 C 0.15 6.09 5.67 86.38 0.49 6.58 16 4 N -0.59 -30.06 2.43 -702.03 -1.71 -31.76 16 5 C -0.24 -13.45 9.00 84.03 0.76 -12.69 16 6 H 0.04 2.57 7.93 -2.91 -0.02 2.54 16 7 C -0.03 -1.63 4.94 84.86 0.42 -1.21 16 8 N -0.92 -55.45 11.34 21.65 0.25 -55.20 16 9 Si 0.94 47.86 29.61 68.60 2.03 49.89 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 12 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 13 C 0.14 6.45 5.72 86.38 0.49 6.95 16 14 C 0.06 2.36 6.15 71.98 0.44 2.80 16 15 O -0.36 -16.18 10.08 -148.98 -1.50 -17.69 16 16 C 0.00 -0.09 6.44 30.59 0.20 0.11 16 17 C -0.19 -5.66 10.48 30.59 0.32 -5.34 16 18 C -0.19 -5.74 10.48 30.59 0.32 -5.42 16 19 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 20 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 25 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 26 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 27 H 0.07 3.95 5.33 -2.39 -0.01 3.93 16 28 H 0.05 2.28 8.07 -2.39 -0.02 2.26 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.13 3.44 7.93 -2.39 -0.02 3.42 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.13 2.95 8.14 -2.38 -0.02 2.93 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -65.84 293.08 4.44 -61.40 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.02 Total: 9.84 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.34 Total: -16.48 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -1.46 Total: -86.96 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -1.50 Total: -17.69 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -65.84 4.44 -61.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711742474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.662 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds