Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.50697 * 109.47466 * 119.99976 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00333 * 2 1 3 13 13 C 1.52997 * 109.47127 * 179.97438 * 12 2 1 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 2 15 15 C 1.53000 * 109.47518 * 59.99828 * 14 13 12 16 16 N 1.46896 * 109.47053 * 59.99800 * 15 14 13 17 17 C 1.53005 * 109.46632 * 300.00318 * 15 14 13 18 18 C 1.52996 * 109.47245 * 59.99973 * 17 15 14 19 19 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 22 22 H 0.96693 * 114.00047 * 180.02562 * 3 2 1 23 23 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 24 24 H 1.09001 * 109.47002 * 299.99574 * 12 2 1 25 25 H 1.09001 * 109.47289 * 299.99953 * 13 12 2 26 26 H 1.09004 * 109.47261 * 59.99697 * 13 12 2 27 27 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 28 28 H 1.09000 * 109.47054 * 179.97438 * 14 13 12 29 29 H 1.08992 * 109.47399 * 180.02562 * 15 14 13 30 30 H 1.00908 * 111.00046 * 60.00136 * 16 15 14 31 31 H 1.00897 * 111.00393 * 183.95598 * 16 15 14 32 32 H 1.09001 * 109.46962 * 299.99689 * 17 15 14 33 33 H 1.08996 * 109.46524 * 179.97438 * 17 15 14 34 34 H 1.09000 * 109.46870 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.47372 * 59.99967 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8261 -0.4206 5.2204 11 1 1.8261 -2.5203 4.0077 12 6 2.0400 -0.7212 -1.2493 13 6 3.5700 -0.7206 -1.2497 14 6 4.0800 -1.4412 -2.4992 15 6 3.5694 -0.7198 -3.7482 16 7 4.0585 0.6653 -3.7478 17 6 2.0394 -0.7204 -3.7477 18 6 1.5295 0.0003 -2.4982 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 2.9703 1.4236 -0.0004 23 1 0.7096 1.1618 3.4843 24 1 1.6767 -1.7489 -1.2493 25 1 3.9330 0.3071 -1.2498 26 1 3.9337 -1.2342 -0.3596 27 1 3.7171 -2.4691 -2.4995 28 1 5.1700 -1.4404 -2.4997 29 1 3.9324 -1.2335 -4.6383 30 1 5.0672 0.6927 -3.7480 31 1 3.6827 1.1817 -4.5289 32 1 1.6765 -1.7483 -3.7480 33 1 1.6757 -0.2061 -4.6372 34 1 0.4394 0.0002 -2.4982 35 1 1.8924 1.0281 -2.4980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885418230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = -70.777996 kcal Electronic energy + Delta-G solvation = -15529.872528 eV Core-core repulsion = 13140.771776 eV Total energy + Delta-G solvation = -2389.100752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -38.77459 -35.85780 -32.21280 -31.97101 -30.29050 -29.28574 -26.90484 -25.16994 -22.06279 -21.70953 -19.24043 -18.27081 -16.68866 -15.51039 -15.40362 -14.55730 -14.48650 -14.13620 -13.24129 -12.97755 -12.49677 -12.27495 -11.59693 -11.52140 -11.32286 -11.16117 -10.83555 -10.72321 -10.59185 -10.38694 -10.35211 -9.97047 -9.86019 -9.45925 -9.41175 -8.51204 -8.35191 -8.29569 -7.78740 -5.82920 -4.02111 3.34880 3.40230 3.42259 4.48255 4.74990 5.17476 5.25375 5.37866 5.45880 5.85640 5.91861 6.06417 6.10003 6.18378 6.20573 6.29602 6.42257 6.54808 6.75908 6.93520 6.99244 7.03581 7.19173 7.22373 7.32360 7.42230 7.43853 7.68186 7.80395 7.94894 8.22802 8.46868 8.98635 9.58118 9.78226 11.15917 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043877 B = 0.009823 C = 0.009019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.991470 B = 2849.776717 C = 3103.846008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.256 3.744 3 O -0.560 6.560 4 C -0.554 4.554 5 H 0.054 0.946 6 C 0.079 3.921 7 N -0.859 5.859 8 Si 0.882 3.118 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C -0.099 4.099 13 C -0.098 4.098 14 C -0.112 4.112 15 C 0.095 3.905 16 N -0.835 5.835 17 C -0.113 4.113 18 C -0.102 4.102 19 H 0.085 0.915 20 H 0.033 0.967 21 H 0.016 0.984 22 H 0.345 0.655 23 H 0.257 0.743 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.019 0.981 30 H 0.334 0.666 31 H 0.335 0.665 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.462 -2.547 -10.640 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.217 3.783 3 O -0.364 6.364 4 C -0.592 4.592 5 H 0.072 0.928 6 C -0.126 4.126 7 N -0.495 5.495 8 Si 0.710 3.290 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.118 4.118 13 C -0.135 4.135 14 C -0.150 4.150 15 C -0.016 4.016 16 N -0.364 5.364 17 C -0.151 4.151 18 C -0.140 4.140 19 H 0.104 0.896 20 H 0.052 0.948 21 H 0.035 0.965 22 H 0.189 0.811 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.325 -2.244 -9.804 10.593 hybrid contribution 1.379 -1.060 -0.058 1.740 sum 4.704 -3.304 -9.863 11.416 Atomic orbital electron populations 1.21646 0.96778 0.98816 1.00988 1.18594 0.90942 0.79721 0.89034 1.86470 1.23521 1.29349 1.97029 1.21637 1.33101 1.13176 0.91314 0.92823 1.24996 0.94428 0.94467 0.98681 1.69999 1.35042 1.21720 1.22778 0.86854 0.79277 0.79884 0.82988 1.20348 1.21393 1.20422 1.21717 0.94750 0.98879 0.96404 1.21360 0.96252 1.00735 0.95169 1.21604 0.98973 0.98650 0.95776 1.21295 0.95685 0.88607 0.96052 1.58634 1.12886 1.13756 1.51172 1.21615 0.94040 1.00376 0.99041 1.21450 0.98888 1.00704 0.92915 0.89642 0.94829 0.96487 0.81075 0.93288 0.93180 0.91315 0.92026 0.92501 0.93331 0.96316 0.85353 0.85330 0.92501 0.93412 0.93261 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 8.27 37.16 0.31 -2.84 16 2 C 0.26 6.38 0.42 -91.77 -0.04 6.34 16 3 O -0.56 -14.57 11.65 -35.23 -0.41 -14.98 16 4 C -0.55 -15.05 7.48 -34.44 -0.26 -15.31 16 5 H 0.05 1.44 6.71 -52.49 -0.35 1.09 16 6 C 0.08 2.20 5.24 -17.82 -0.09 2.11 16 7 N -0.86 -25.02 10.87 55.43 0.60 -24.42 16 8 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C -0.10 -2.04 1.57 -90.62 -0.14 -2.19 16 13 C -0.10 -1.84 4.49 -26.73 -0.12 -1.96 16 14 C -0.11 -1.72 5.61 -26.73 -0.15 -1.87 16 15 C 0.09 1.31 3.57 -67.71 -0.24 1.07 16 16 N -0.83 -10.77 7.72 -4.67 -0.04 -10.81 16 17 C -0.11 -1.70 5.57 -26.73 -0.15 -1.84 16 18 C -0.10 -1.89 4.55 -26.73 -0.12 -2.02 16 19 H 0.08 2.40 6.07 -51.93 -0.32 2.08 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.02 0.38 6.43 -51.93 -0.33 0.05 16 22 H 0.35 8.32 7.32 45.56 0.33 8.65 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.07 1.33 6.24 -51.93 -0.32 1.00 16 26 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.33 3.76 9.04 -39.29 -0.36 3.40 16 31 H 0.33 3.80 8.99 -39.29 -0.35 3.44 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.94 6.43 -51.93 -0.33 0.61 16 35 H 0.08 1.52 7.14 -51.93 -0.37 1.15 16 LS Contribution 264.16 15.07 3.98 3.98 Total: -1.00 -29.33 264.16 -6.73 -36.07 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -4.84 Total: 12.32 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -1.01 Total: -18.50 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.57 Total: -35.23 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.41 Total: -14.98 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.33 -6.73 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885418230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.710 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds