Wall clock time and date at job start Mon Mar 30 2020 02:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47462 * 2 1 4 4 O 1.42895 * 109.47193 * 120.00152 * 2 1 3 5 5 C 1.52998 * 109.47004 * 240.00104 * 2 1 3 6 6 H 1.08997 * 109.47449 * 57.06167 * 5 2 1 7 7 C 1.53000 * 109.47445 * 177.06348 * 5 2 1 8 8 N 1.46902 * 109.46917 * 297.05988 * 5 2 1 9 9 C 1.46897 * 111.00299 * 279.48223 * 8 5 2 10 10 C 1.50702 * 109.47377 * 163.11484 * 9 8 5 11 11 H 1.08003 * 119.99701 * 4.71591 * 10 9 8 12 12 C 1.37868 * 120.00123 * 184.71795 * 10 9 8 13 13 N 1.31514 * 120.00377 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00192 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46696 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47062 * 120.00029 * 14 12 10 17 17 H 1.48494 * 109.47582 * 240.00296 * 14 12 10 18 18 C 1.46905 * 110.99935 * 155.52837 * 8 5 2 19 19 C 1.53000 * 117.49734 * 7.82134 * 18 8 5 20 20 C 1.53002 * 117.49649 * 299.19823 * 18 8 5 21 21 H 1.08998 * 109.47351 * 185.03576 * 1 2 3 22 22 H 1.09000 * 109.46612 * 305.03815 * 1 2 3 23 23 H 1.08998 * 109.47094 * 65.03032 * 1 2 3 24 24 H 0.96697 * 114.00394 * 47.77818 * 4 2 1 25 25 H 1.09005 * 109.47185 * 59.99736 * 7 5 2 26 26 H 1.09001 * 109.47220 * 179.97438 * 7 5 2 27 27 H 1.08997 * 109.46780 * 300.00186 * 7 5 2 28 28 H 1.08998 * 109.47290 * 283.11443 * 9 8 5 29 29 H 1.09005 * 109.46820 * 43.11377 * 9 8 5 30 30 H 0.96998 * 120.00478 * 180.02562 * 13 12 10 31 31 H 1.08999 * 115.54892 * 153.53163 * 18 8 5 32 32 H 1.08994 * 117.50084 * 359.97438 * 19 18 8 33 33 H 1.09004 * 117.49540 * 145.02080 * 19 18 8 34 34 H 1.09001 * 117.49649 * 214.98048 * 20 18 8 35 35 H 1.08994 * 117.49987 * 0.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2492 6 1 1.6343 -0.2387 -2.1384 7 6 3.5682 -0.6576 -1.2868 8 7 1.6091 -2.1252 -1.2142 9 6 2.4871 -2.9239 -0.3487 10 6 1.8051 -4.2225 -0.0025 11 1 0.8518 -4.4671 -0.4474 12 6 2.3980 -5.0981 0.8820 13 7 3.5585 -4.8000 1.4242 14 14 1.5523 -6.7073 1.3117 15 1 0.2673 -6.8036 0.5737 16 1 2.4282 -7.8441 0.9300 17 1 1.2894 -6.7538 2.7725 18 6 1.5484 -2.6912 -2.5685 19 6 2.0964 -1.8395 -3.7153 20 6 0.5870 -2.0391 -3.5642 21 1 -0.3634 -1.0237 0.0902 22 1 -0.3632 0.5900 0.8414 23 1 -0.3633 0.4338 -0.9316 24 1 1.5778 -1.5245 1.3322 25 1 3.9739 -1.1401 -0.3976 26 1 3.9315 -1.1718 -2.1766 27 1 3.8879 0.3841 -1.3127 28 1 3.4208 -3.1320 -0.8712 29 1 2.6982 -2.3693 0.5656 30 1 3.9759 -5.4162 2.0463 31 1 1.6844 -3.7707 -2.6334 32 1 2.5016 -0.8591 -3.4650 33 1 2.5933 -2.3587 -4.5349 34 1 0.0908 -2.6897 -4.2844 35 1 -0.0001 -1.1900 -3.2146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087130874.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:45 Heat of formation + Delta-G solvation = -13.933346 kcal Electronic energy + Delta-G solvation = -15470.861574 eV Core-core repulsion = 13084.225791 eV Total energy + Delta-G solvation = -2386.635783 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.24581 -36.35582 -33.44321 -32.47406 -30.53941 -28.89524 -26.26688 -23.41953 -22.09551 -21.85516 -21.30255 -18.46269 -16.78893 -15.93413 -15.43273 -15.02853 -14.35659 -13.99848 -13.76572 -12.99356 -12.86710 -12.37216 -11.98162 -11.78481 -11.43805 -11.29860 -11.06440 -10.97523 -10.91190 -10.69629 -10.53255 -10.15484 -10.07316 -9.96297 -9.60940 -9.27380 -8.79864 -8.31795 -7.10389 -6.00448 -4.02075 3.31290 3.39544 3.43740 4.34807 4.46550 4.83083 4.99777 5.33147 5.37333 5.48521 5.49937 5.55884 5.64312 5.83066 5.84486 6.00158 6.03034 6.18110 6.21989 6.34147 6.44308 6.49792 6.53381 6.68071 6.77919 6.91477 7.32149 7.44772 7.83956 8.12275 8.22346 8.43957 8.56340 9.07117 9.62007 11.09159 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.011288 C = 0.009764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.812536 B = 2479.931671 C = 2866.901892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.118 3.882 3 H 0.082 0.918 4 O -0.566 6.566 5 C 0.042 3.958 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.497 5.497 9 C 0.172 3.828 10 C -0.510 4.510 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.287 1.287 17 H -0.285 1.285 18 C 0.055 3.945 19 C -0.235 4.235 20 C -0.187 4.187 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.393 0.607 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.043 0.957 28 H -0.007 1.007 29 H 0.067 0.933 30 H 0.260 0.740 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 7.426 -5.963 10.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.058 3.942 3 H 0.100 0.900 4 O -0.377 6.377 5 C -0.067 4.067 6 H 0.092 0.908 7 C -0.237 4.237 8 N -0.219 5.219 9 C 0.048 3.952 10 C -0.549 4.549 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.213 1.213 17 H -0.211 1.211 18 C -0.055 4.055 19 C -0.274 4.274 20 C -0.225 4.225 21 H 0.095 0.905 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.246 0.754 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.011 0.989 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.858 7.841 -5.550 10.352 hybrid contribution 0.092 -1.370 -0.342 1.415 sum -3.765 6.471 -5.892 9.527 Atomic orbital electron populations 1.22391 0.96666 1.03503 1.00710 1.21734 0.92744 0.94613 0.85080 0.89993 1.86459 1.67158 1.39232 1.44873 1.22442 0.93969 0.92138 0.98173 0.90840 1.22448 0.97307 1.00685 1.03215 1.62148 1.52169 1.00179 1.07405 1.20266 0.90059 0.92534 0.92370 1.21261 1.05893 1.02331 1.25428 0.92021 1.24959 0.94973 0.98337 0.96192 1.69970 1.16250 1.36665 1.30500 0.86515 0.79558 0.83624 0.78142 1.19770 1.21286 1.21081 1.22634 1.00214 0.97570 0.85098 1.23655 0.96784 1.03234 1.03765 1.23008 0.92140 1.03792 1.03594 0.90499 0.93283 0.92851 0.75388 0.90434 0.92901 0.93809 0.98944 0.91565 0.93016 0.86259 0.88492 0.89893 0.89519 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 9.23 37.16 0.34 -2.31 16 2 C 0.12 1.99 3.41 -26.73 -0.09 1.90 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 O -0.57 -11.36 11.21 -35.23 -0.40 -11.75 16 5 C 0.04 0.73 1.71 -67.71 -0.12 0.62 16 6 H 0.07 1.18 5.28 -51.93 -0.27 0.91 16 7 C -0.18 -3.20 7.57 37.16 0.28 -2.92 16 8 N -0.50 -10.00 3.91 -220.14 -0.86 -10.86 16 9 C 0.17 4.19 2.62 -4.98 -0.01 4.18 16 10 C -0.51 -13.67 8.59 -34.44 -0.30 -13.97 16 11 H 0.06 1.66 7.80 -52.48 -0.41 1.25 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 13 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.06 1.04 5.71 -67.71 -0.39 0.65 16 19 C -0.24 -3.73 8.58 -26.73 -0.23 -3.96 16 20 C -0.19 -2.91 9.94 -26.73 -0.27 -3.18 16 21 H 0.08 1.31 7.82 -51.93 -0.41 0.90 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.39 8.32 6.71 45.56 0.31 8.62 16 25 H 0.08 1.63 6.03 -51.93 -0.31 1.31 16 26 H 0.05 0.94 6.43 -51.93 -0.33 0.61 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H -0.01 -0.20 7.33 -51.93 -0.38 -0.58 16 29 H 0.07 1.70 3.97 -51.93 -0.21 1.50 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.12 2.48 7.59 -51.93 -0.39 2.09 16 32 H 0.10 1.50 4.87 -51.93 -0.25 1.25 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.33 7.73 -51.93 -0.40 0.92 16 LS Contribution 270.80 15.07 4.08 4.08 Total: -1.00 -27.81 270.80 -7.07 -34.88 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.74 Total: 10.10 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.87 Total: -17.51 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.12 Total: -36.05 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.40 Total: -11.75 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.81 -7.07 -34.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087130874.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.949 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds