Wall clock time and date at job start Mon Mar 30 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47462 * 2 1 4 4 O 1.42895 * 109.47193 * 120.00152 * 2 1 3 5 5 C 1.52998 * 109.47004 * 240.00104 * 2 1 3 6 6 H 1.08997 * 109.47449 * 57.06167 * 5 2 1 7 7 C 1.53000 * 109.47445 * 177.06348 * 5 2 1 8 8 N 1.46902 * 109.46917 * 297.05988 * 5 2 1 9 9 C 1.46897 * 111.00299 * 279.48223 * 8 5 2 10 10 C 1.50702 * 109.47377 * 163.11484 * 9 8 5 11 11 H 1.08003 * 119.99701 * 4.71591 * 10 9 8 12 12 C 1.37868 * 120.00123 * 184.71795 * 10 9 8 13 13 N 1.31514 * 120.00377 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00192 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46696 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47062 * 120.00029 * 14 12 10 17 17 H 1.48494 * 109.47582 * 240.00296 * 14 12 10 18 18 C 1.46905 * 110.99935 * 155.52837 * 8 5 2 19 19 C 1.53000 * 117.49734 * 7.82134 * 18 8 5 20 20 C 1.53002 * 117.49649 * 299.19823 * 18 8 5 21 21 H 1.08998 * 109.47351 * 185.03576 * 1 2 3 22 22 H 1.09000 * 109.46612 * 305.03815 * 1 2 3 23 23 H 1.08998 * 109.47094 * 65.03032 * 1 2 3 24 24 H 0.96697 * 114.00394 * 47.77818 * 4 2 1 25 25 H 1.09005 * 109.47185 * 59.99736 * 7 5 2 26 26 H 1.09001 * 109.47220 * 179.97438 * 7 5 2 27 27 H 1.08997 * 109.46780 * 300.00186 * 7 5 2 28 28 H 1.08998 * 109.47290 * 283.11443 * 9 8 5 29 29 H 1.09005 * 109.46820 * 43.11377 * 9 8 5 30 30 H 0.96998 * 120.00478 * 180.02562 * 13 12 10 31 31 H 1.08999 * 115.54892 * 153.53163 * 18 8 5 32 32 H 1.08994 * 117.50084 * 359.97438 * 19 18 8 33 33 H 1.09004 * 117.49540 * 145.02080 * 19 18 8 34 34 H 1.09001 * 117.49649 * 214.98048 * 20 18 8 35 35 H 1.08994 * 117.49987 * 0.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2492 6 1 1.6343 -0.2387 -2.1384 7 6 3.5682 -0.6576 -1.2868 8 7 1.6091 -2.1252 -1.2142 9 6 2.4871 -2.9239 -0.3487 10 6 1.8051 -4.2225 -0.0025 11 1 0.8518 -4.4671 -0.4474 12 6 2.3980 -5.0981 0.8820 13 7 3.5585 -4.8000 1.4242 14 14 1.5523 -6.7073 1.3117 15 1 0.2673 -6.8036 0.5737 16 1 2.4282 -7.8441 0.9300 17 1 1.2894 -6.7538 2.7725 18 6 1.5484 -2.6912 -2.5685 19 6 2.0964 -1.8395 -3.7153 20 6 0.5870 -2.0391 -3.5642 21 1 -0.3634 -1.0237 0.0902 22 1 -0.3632 0.5900 0.8414 23 1 -0.3633 0.4338 -0.9316 24 1 1.5778 -1.5245 1.3322 25 1 3.9739 -1.1401 -0.3976 26 1 3.9315 -1.1718 -2.1766 27 1 3.8879 0.3841 -1.3127 28 1 3.4208 -3.1320 -0.8712 29 1 2.6982 -2.3693 0.5656 30 1 3.9759 -5.4162 2.0463 31 1 1.6844 -3.7707 -2.6334 32 1 2.5016 -0.8591 -3.4650 33 1 2.5933 -2.3587 -4.5349 34 1 0.0908 -2.6897 -4.2844 35 1 -0.0001 -1.1900 -3.2146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087130874.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:44 Heat of formation + Delta-G solvation = -32.996609 kcal Electronic energy + Delta-G solvation = -15471.688219 eV Core-core repulsion = 13084.225791 eV Total energy + Delta-G solvation = -2387.462428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.72898 -37.78189 -35.27893 -34.18039 -32.15740 -30.32507 -28.16261 -25.00280 -23.80808 -23.14721 -22.71843 -19.99692 -18.59128 -17.68973 -16.93587 -16.61526 -16.17037 -15.41819 -15.21636 -14.55998 -14.49553 -13.90698 -13.61623 -13.51522 -12.89242 -12.84492 -12.70459 -12.59269 -12.34044 -12.21655 -12.14615 -11.86941 -11.59304 -11.46930 -11.18568 -10.99823 -10.64870 -10.20172 -8.70253 -8.12139 -6.20942 1.41439 1.43313 1.55332 2.43580 2.99196 3.18938 3.38733 3.57699 3.99077 4.08844 4.17010 4.21693 4.32186 4.45276 4.55874 4.63063 4.77118 4.84874 4.90668 5.04246 5.07225 5.17851 5.19312 5.29447 5.35072 5.45027 5.47362 5.58264 5.75531 6.18047 6.48614 6.73441 6.86950 6.97496 7.47790 8.97039 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.011288 C = 0.009764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.812536 B = 2479.931671 C = 2866.901892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 H 0.106 0.894 4 O -0.583 6.583 5 C 0.042 3.958 6 H 0.100 0.900 7 C -0.172 4.172 8 N -0.496 5.496 9 C 0.194 3.806 10 C -0.517 4.517 11 H 0.056 0.944 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.280 1.280 18 C 0.012 3.988 19 C -0.219 4.219 20 C -0.159 4.159 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.383 0.617 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.071 0.929 28 H -0.046 1.046 29 H 0.053 0.947 30 H 0.261 0.739 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 8.488 -7.204 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.123 0.877 4 O -0.393 6.393 5 C -0.066 4.066 6 H 0.118 0.882 7 C -0.230 4.230 8 N -0.218 5.218 9 C 0.068 3.932 10 C -0.556 4.556 11 H 0.075 0.925 12 C -0.193 4.193 13 N -0.572 5.572 14 Si 0.786 3.214 15 H -0.190 1.190 16 H -0.211 1.211 17 H -0.206 1.206 18 C -0.098 4.098 19 C -0.257 4.257 20 C -0.196 4.196 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.235 0.765 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.090 0.910 28 H -0.029 1.029 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.320 8.922 -6.817 12.425 hybrid contribution 0.561 -1.645 -0.025 1.738 sum -4.759 7.277 -6.842 11.064 Atomic orbital electron populations 1.22285 0.95030 1.02496 1.02504 1.22053 0.94183 0.95103 0.83616 0.87669 1.86446 1.67730 1.38718 1.46420 1.22578 0.93608 0.90761 0.99677 0.88234 1.22363 0.97722 1.01868 1.01090 1.62076 1.50792 1.00980 1.07912 1.19839 0.88832 0.92258 0.92237 1.21545 1.05589 1.03457 1.24962 0.92542 1.25764 0.95543 1.01721 0.96225 1.70096 1.17761 1.37972 1.31331 0.85478 0.78630 0.79398 0.77930 1.19008 1.21093 1.20585 1.22561 1.04979 0.96730 0.85563 1.23676 0.97484 1.02670 1.01916 1.23079 0.91970 1.03346 1.01253 0.92769 0.92067 0.90531 0.76498 0.94317 0.93282 0.91042 1.02877 0.92973 0.93007 0.89291 0.87675 0.88822 0.87768 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 9.23 71.98 0.66 -3.96 16 2 C 0.11 3.51 3.41 30.59 0.10 3.61 16 3 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 4 O -0.58 -23.64 11.21 -148.98 -1.67 -25.31 16 5 C 0.04 1.42 1.71 44.91 0.08 1.50 16 6 H 0.10 2.84 5.28 -2.39 -0.01 2.83 16 7 C -0.17 -6.08 7.57 71.98 0.54 -5.54 16 8 N -0.50 -19.96 3.91 -850.39 -3.32 -23.29 16 9 C 0.19 9.84 2.62 85.56 0.22 10.07 16 10 C -0.52 -28.51 8.59 25.60 0.22 -28.29 16 11 H 0.06 3.11 7.80 -2.91 -0.02 3.08 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -55.63 13.29 21.44 0.28 -55.34 16 14 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 C 0.01 0.43 5.71 44.92 0.26 0.69 16 19 C -0.22 -6.40 8.58 30.60 0.26 -6.14 16 20 C -0.16 -4.44 9.94 30.60 0.30 -4.14 16 21 H 0.05 1.77 7.82 -2.39 -0.02 1.75 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.38 16.84 6.71 -74.06 -0.50 16.34 16 25 H 0.04 1.66 6.03 -2.38 -0.01 1.65 16 26 H 0.05 1.73 6.43 -2.39 -0.02 1.72 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H -0.05 -2.67 7.33 -2.39 -0.02 -2.69 16 29 H 0.05 2.82 3.97 -2.38 -0.01 2.81 16 30 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.09 3.81 7.59 -2.39 -0.02 3.80 16 32 H 0.11 2.91 4.87 -2.39 -0.01 2.90 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.10 2.60 7.73 -2.39 -0.02 2.58 16 Total: -1.00 -61.31 270.80 1.01 -60.29 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.58 Total: 28.73 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.12 Total: -31.43 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -3.04 Total: -78.63 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.67 Total: -25.31 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.31 1.01 -60.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087130874.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.296 kcal (2) G-P(sol) polarization free energy of solvation -61.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds