Wall clock time and date at job start Mon Mar 30 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99860 * 2 1 4 4 H 1.09004 * 109.46673 * 9.13183 * 3 2 1 5 5 C 1.50694 * 109.47010 * 129.13368 * 3 2 1 6 6 H 1.07998 * 119.99623 * 120.00103 * 5 3 2 7 7 C 1.37879 * 120.00109 * 299.99816 * 5 3 2 8 8 N 1.31515 * 119.99793 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99913 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47172 * 60.00173 * 9 7 5 11 11 H 1.48504 * 109.47035 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47536 * 300.00092 * 9 7 5 13 13 C 1.53008 * 109.46968 * 249.13435 * 3 2 1 14 14 H 1.08996 * 109.49825 * 294.67121 * 13 3 2 15 15 C 1.53118 * 109.50113 * 54.74571 * 13 3 2 16 16 C 1.53127 * 109.15803 * 177.59227 * 15 13 3 17 17 C 1.53037 * 109.27858 * 302.35065 * 16 15 13 18 18 N 1.46840 * 109.52447 * 59.17666 * 17 16 15 19 19 C 1.46906 * 111.00181 * 174.15857 * 18 17 16 20 20 C 1.46850 * 111.19992 * 298.25540 * 18 17 16 21 21 H 1.09006 * 109.47435 * 182.29138 * 1 2 3 22 22 H 1.08998 * 109.47815 * 62.28810 * 1 2 3 23 23 H 1.09007 * 109.46999 * 302.28888 * 1 2 3 24 24 H 0.97001 * 119.99602 * 179.97438 * 8 7 5 25 25 H 1.09000 * 109.52902 * 297.50099 * 15 13 3 26 26 H 1.09003 * 109.52549 * 57.69666 * 15 13 3 27 27 H 1.09001 * 109.49816 * 62.28956 * 16 15 13 28 28 H 1.08995 * 109.50068 * 182.36580 * 16 15 13 29 29 H 1.09001 * 109.45955 * 179.19531 * 17 16 15 30 30 H 1.08996 * 109.45963 * 299.16110 * 17 16 15 31 31 H 1.09000 * 109.46699 * 63.95285 * 19 18 17 32 32 H 1.08998 * 109.47081 * 183.95312 * 19 18 17 33 33 H 1.09000 * 109.46585 * 303.96027 * 19 18 17 34 34 H 1.08998 * 109.46381 * 301.72978 * 20 18 17 35 35 H 1.08997 * 109.46466 * 181.75548 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2310 2.0501 0.1631 5 6 3.0337 1.3997 1.1021 6 1 4.0638 1.6207 0.8648 7 6 2.6549 1.2037 2.4132 8 7 1.4005 0.9341 2.7020 9 14 3.9235 1.3212 3.7793 10 1 4.5269 2.6780 3.7792 11 1 3.2665 1.0723 5.0877 12 1 4.9855 0.3072 3.5574 13 6 2.6870 1.5624 -1.3480 14 1 3.5270 0.8786 -1.4695 15 6 1.6779 1.3384 -2.4776 16 6 2.3459 1.6557 -3.8184 17 6 2.8598 3.0970 -3.7984 18 7 3.8219 3.2598 -2.7012 19 6 4.4400 4.5920 -2.7362 20 6 3.1909 3.0065 -1.3996 21 1 -0.3634 -1.0269 0.0411 22 1 -0.3635 0.4779 -0.9097 23 1 -0.3633 0.5490 0.8688 24 1 1.1342 0.7959 3.6245 25 1 1.3488 0.2993 -2.4714 26 1 0.8192 1.9943 -2.3343 27 1 3.1809 0.9738 -3.9793 28 1 1.6202 1.5385 -4.6232 29 1 3.3486 3.3215 -4.7465 30 1 2.0224 3.7791 -3.6513 31 1 3.6762 5.3514 -2.5686 32 1 5.1985 4.6613 -1.9565 33 1 4.9038 4.7518 -3.7096 34 1 2.3520 3.6890 -1.2637 35 1 3.9203 3.1652 -0.6053 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261309708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:19 Heat of formation + Delta-G solvation = -55.341420 kcal Electronic energy + Delta-G solvation = -15250.253932 eV Core-core repulsion = 12861.822560 eV Total energy + Delta-G solvation = -2388.431372 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.69847 -36.23224 -32.89205 -32.43867 -30.87186 -26.92253 -26.30672 -24.83218 -23.20095 -22.22489 -20.34824 -18.97034 -16.51404 -15.47472 -15.11645 -14.51794 -14.29457 -14.14055 -13.59878 -13.47307 -13.08319 -12.83434 -12.24789 -11.89028 -11.85066 -11.43046 -11.17959 -10.90901 -10.79797 -10.64386 -10.26749 -10.08663 -10.07115 -9.57590 -9.47208 -9.10456 -8.42144 -7.91640 -7.70282 -6.01219 -4.09161 3.33703 3.38004 3.41488 4.33554 4.44472 5.15375 5.27777 5.36421 5.43299 5.62272 5.72943 5.77116 5.83753 6.05269 6.06998 6.08068 6.21141 6.28716 6.41818 6.45649 6.54952 6.58239 6.69612 6.91919 6.97986 7.05250 7.12076 7.46356 7.52313 7.59855 7.93552 8.34011 8.89420 9.13667 9.60193 11.07451 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.010711 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.091447 B = 2613.401461 C = 3365.110402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.380 6.380 3 C 0.224 3.776 4 H 0.014 0.986 5 C -0.527 4.527 6 H 0.062 0.938 7 C 0.075 3.925 8 N -0.874 5.874 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 C -0.089 4.089 14 H 0.071 0.929 15 C -0.115 4.115 16 C -0.115 4.115 17 C 0.058 3.942 18 N -0.546 5.546 19 C 0.027 3.973 20 C 0.073 3.927 21 H 0.050 0.950 22 H 0.005 0.995 23 H 0.048 0.952 24 H 0.260 0.740 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 4.182 -9.412 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.299 6.299 3 C 0.167 3.833 4 H 0.032 0.968 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.129 4.129 8 N -0.511 5.511 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.108 4.108 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.070 4.070 18 N -0.271 5.271 19 C -0.121 4.121 20 C -0.054 4.054 21 H 0.068 0.932 22 H 0.023 0.977 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.055 3.640 -9.331 10.072 hybrid contribution -0.260 0.873 0.930 1.302 sum 0.795 4.513 -8.402 9.570 Atomic orbital electron populations 1.22423 0.85052 0.99480 0.98118 1.87941 1.16352 1.31119 1.94447 1.19628 0.92226 0.82055 0.89372 0.96798 1.21315 0.95359 1.48964 0.90795 0.92013 1.25022 0.95127 0.93957 0.98799 1.69932 1.15940 1.46359 1.18903 0.86669 0.81740 0.78574 0.80998 1.20257 1.21354 1.20085 1.21582 0.98068 0.94991 0.96188 0.91031 1.21642 0.98054 1.01342 0.94223 1.21594 0.99900 0.96005 0.97817 1.22044 0.93718 0.97052 0.94204 1.61965 1.33214 1.27662 1.04222 1.22307 0.98706 0.89198 1.01892 1.22064 0.97415 0.96764 0.89185 0.93186 0.97663 0.93300 0.93001 0.91589 0.93461 0.91434 0.92506 0.91748 0.95601 0.96216 0.91424 0.92129 0.95765 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 10.20 101.05 1.03 2.09 16 2 O -0.38 -9.97 9.01 -35.23 -0.32 -10.29 16 3 C 0.22 5.71 1.69 -27.88 -0.05 5.66 16 4 H 0.01 0.39 7.62 -51.93 -0.40 -0.01 16 5 C -0.53 -14.60 8.11 -34.44 -0.28 -14.88 16 6 H 0.06 1.68 7.09 -52.49 -0.37 1.31 16 7 C 0.08 2.11 5.40 -17.82 -0.10 2.01 16 8 N -0.87 -25.19 11.96 55.43 0.66 -24.52 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C -0.09 -1.91 2.08 -90.54 -0.19 -2.10 16 14 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 15 C -0.11 -2.13 4.24 -26.60 -0.11 -2.24 16 16 C -0.12 -1.78 6.09 -26.65 -0.16 -1.94 16 17 C 0.06 0.87 5.46 -3.84 -0.02 0.85 16 18 N -0.55 -9.23 4.91 -242.96 -1.19 -10.42 16 19 C 0.03 0.38 9.59 60.07 0.58 0.96 16 20 C 0.07 1.43 4.55 -3.83 -0.02 1.41 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.00 0.10 7.28 -51.93 -0.38 -0.28 16 23 H 0.05 1.20 7.42 -51.92 -0.39 0.81 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.07 1.26 7.33 -51.93 -0.38 0.88 16 26 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.76 6.99 -51.93 -0.36 1.40 16 LS Contribution 275.64 15.07 4.15 4.15 Total: -1.00 -29.26 275.64 -7.09 -36.34 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -6.05 Total: -3.50 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 0.68 Total: -8.19 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: -0.53 Total: -34.94 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.32 Total: -10.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.26 -7.09 -36.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.000 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds