Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46437 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47263 * 119.99625 * 8 6 4 11 11 H 1.48498 * 109.47269 * 240.00311 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 H 1.09000 * 109.46917 * 324.99892 * 13 12 2 15 15 C 1.52993 * 109.47269 * 84.99904 * 13 12 2 16 16 O 1.42904 * 109.47352 * 64.99883 * 15 13 12 17 17 C 1.53001 * 109.47087 * 205.00123 * 13 12 2 18 18 C 1.53002 * 109.47188 * 64.99539 * 17 13 12 19 19 C 1.53003 * 117.50098 * 243.62347 * 18 17 13 20 20 C 1.52998 * 117.49698 * 175.00127 * 18 17 13 21 21 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 24 24 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 25 25 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 26 26 H 1.09000 * 109.47163 * 184.99770 * 15 13 12 27 27 H 1.08999 * 109.47187 * 305.00090 * 15 13 12 28 28 H 0.96693 * 113.99881 * 179.97438 * 16 15 13 29 29 H 1.08994 * 109.47082 * 184.99888 * 17 13 12 30 30 H 1.08999 * 109.46730 * 304.99823 * 17 13 12 31 31 H 1.09002 * 115.54823 * 29.33574 * 18 17 13 32 32 H 1.08999 * 117.49630 * 0.02562 * 19 18 17 33 33 H 1.08994 * 117.49894 * 145.02406 * 19 18 17 34 34 H 1.09004 * 117.50070 * 214.98317 * 20 18 17 35 35 H 1.09004 * 117.49991 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.1485 -2.2856 3.6037 10 1 3.1472 -0.1858 4.8160 11 1 1.1678 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 1 1.2576 0.9330 -2.2907 15 6 3.4111 0.9809 -2.3224 16 8 4.4881 0.0612 -2.5129 17 6 1.9770 -0.5796 -3.6455 18 6 0.5983 -1.2380 -3.7277 19 6 0.5443 -2.7670 -3.7259 20 6 0.2514 -1.9927 -5.0125 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 0.7089 1.1613 3.4844 25 1 1.4495 -1.4979 -1.4101 26 1 3.4210 1.7225 -3.1211 27 1 3.5263 1.4810 -1.3608 28 1 5.3627 0.4736 -2.5091 29 1 2.1125 0.0875 -4.4967 30 1 2.7487 -1.3493 -3.6606 31 1 -0.2079 -0.7049 -3.2237 32 1 1.4910 -3.3039 -3.6657 33 1 -0.2975 -3.2403 -3.2206 34 1 -0.7832 -1.9565 -5.3538 35 1 1.0052 -2.0198 -5.7995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308146607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = -35.482200 kcal Electronic energy + Delta-G solvation = -14830.537192 eV Core-core repulsion = 12442.966981 eV Total energy + Delta-G solvation = -2387.570211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.25042 -36.38301 -35.11823 -32.71072 -30.39897 -26.82825 -26.12485 -25.05645 -22.19546 -20.94212 -20.16946 -19.45450 -16.89066 -16.34215 -15.50038 -14.75489 -14.42539 -14.34501 -13.66541 -13.11155 -12.91118 -12.41561 -12.18798 -11.69449 -11.49028 -11.32851 -11.04002 -10.89700 -10.66764 -10.54371 -10.43493 -10.08417 -9.91057 -9.77339 -9.57775 -9.29086 -8.88395 -8.30646 -7.05875 -5.92993 -3.95017 3.34909 3.42431 3.48966 4.00336 4.49218 4.84674 4.89409 5.10061 5.13460 5.34964 5.38835 5.52231 5.73269 5.76383 5.90406 5.95295 6.04493 6.11571 6.28007 6.39245 6.43942 6.45654 6.72470 6.75660 6.89023 7.17641 7.45479 7.80655 7.97875 8.18310 8.37792 8.68935 8.74845 9.13981 9.70311 11.14224 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.008427 C = 0.007583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.548353 B = 3321.909578 C = 3691.433590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.209 3.791 3 H 0.030 0.970 4 C -0.488 4.488 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.287 1.287 12 N -0.669 5.669 13 C 0.091 3.909 14 H 0.045 0.955 15 C 0.090 3.910 16 O -0.555 6.555 17 C -0.083 4.083 18 C -0.151 4.151 19 C -0.176 4.176 20 C -0.186 4.186 21 H 0.027 0.973 22 H 0.087 0.913 23 H 0.003 0.997 24 H 0.257 0.743 25 H 0.329 0.671 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.363 0.637 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -1.167 -11.863 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.101 3.899 3 H 0.048 0.952 4 C -0.527 4.527 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.300 5.300 13 C -0.020 4.020 14 H 0.063 0.937 15 C 0.012 3.988 16 O -0.358 6.358 17 C -0.120 4.120 18 C -0.169 4.169 19 C -0.213 4.213 20 C -0.223 4.223 21 H 0.046 0.954 22 H 0.106 0.894 23 H 0.022 0.978 24 H 0.067 0.933 25 H 0.148 0.852 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.208 0.792 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.914 -1.409 -11.584 11.705 hybrid contribution -0.380 0.232 0.786 0.903 sum 0.534 -1.177 -10.798 10.875 Atomic orbital electron populations 1.22439 1.00985 0.99084 1.00248 1.19217 0.89314 0.94308 0.87013 0.95168 1.21227 1.29613 1.12246 0.89589 0.91905 1.24953 0.95479 0.95265 0.99002 1.69897 1.37731 1.23380 1.23063 0.86479 0.78483 0.79712 0.82960 1.19731 1.21240 1.21291 1.60759 1.58070 1.08580 1.02603 1.21465 0.94085 0.94967 0.91514 0.93749 1.22225 0.87664 0.90533 0.98426 1.86582 1.16261 1.37038 1.95932 1.21239 0.94311 0.99665 0.96826 1.22402 0.99441 0.94302 1.00803 1.23008 1.03233 0.94390 1.00649 1.22921 1.01717 1.06050 0.91657 0.95424 0.89391 0.97811 0.93267 0.85243 0.95231 0.93297 0.79227 0.92244 0.90352 0.88181 0.88588 0.89093 0.89387 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.92 37.16 0.33 -3.77 16 2 C 0.21 5.34 2.37 -68.86 -0.16 5.18 16 3 H 0.03 0.84 7.10 -51.93 -0.37 0.47 16 4 C -0.49 -13.83 8.84 -34.44 -0.30 -14.13 16 5 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 6 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 N -0.67 -14.69 5.99 -100.95 -0.60 -15.29 16 13 C 0.09 1.67 2.21 -67.72 -0.15 1.52 16 14 H 0.04 0.85 7.11 -51.93 -0.37 0.48 16 15 C 0.09 1.56 6.78 37.15 0.25 1.81 16 16 O -0.56 -9.46 12.83 -35.23 -0.45 -9.91 16 17 C -0.08 -1.29 4.80 -26.73 -0.13 -1.42 16 18 C -0.15 -2.20 4.69 -90.62 -0.42 -2.62 16 19 C -0.18 -2.38 9.96 -26.73 -0.27 -2.64 16 20 C -0.19 -2.27 10.25 -26.73 -0.27 -2.54 16 21 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 22 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 23 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.33 7.04 6.93 -39.29 -0.27 6.77 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.94 7.38 -51.93 -0.38 0.56 16 28 H 0.36 4.43 9.12 45.56 0.42 4.84 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.31 7.46 -51.93 -0.39 0.93 16 31 H 0.10 1.56 8.07 -51.93 -0.42 1.14 16 32 H 0.10 1.30 8.03 -51.93 -0.42 0.89 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 284.78 15.07 4.29 4.29 Total: -1.00 -30.14 284.78 -7.36 -37.51 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.98 Total: 9.19 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -1.22 Total: -17.22 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.02 Total: -40.77 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.45 Total: -9.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.14 -7.36 -37.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308146607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.024 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds