Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30077 * 126.20376 * 2 1 4 4 N 1.28649 * 109.56115 * 179.71006 * 3 2 1 5 5 C 1.31145 * 109.30845 * 0.44462 * 4 3 2 6 6 S 1.76199 * 126.37919 * 179.82210 * 5 4 3 7 7 C 1.80999 * 99.99987 * 359.69541 * 6 5 4 8 8 H 1.08996 * 109.47619 * 54.99873 * 7 6 5 9 9 C 1.53004 * 109.46885 * 294.99389 * 7 6 5 10 10 C 1.50707 * 109.47272 * 174.99846 * 7 6 5 11 11 H 1.07997 * 119.99667 * 34.94605 * 10 7 6 12 12 C 1.37871 * 120.00267 * 215.22410 * 10 7 6 13 13 N 1.31505 * 120.00328 * 182.08876 * 12 10 7 14 14 Si 1.86803 * 119.99639 * 2.09087 * 12 10 7 15 15 H 1.48494 * 109.47362 * 85.07972 * 14 12 10 16 16 H 1.48506 * 109.46784 * 205.07642 * 14 12 10 17 17 H 1.48499 * 109.47061 * 325.07243 * 14 12 10 18 18 O 1.34631 * 107.24235 * 359.56703 * 5 4 3 19 19 H 1.09000 * 109.46435 * 270.02138 * 1 2 3 20 20 H 1.08995 * 109.47329 * 30.02345 * 1 2 3 21 21 H 1.09004 * 109.46842 * 150.02686 * 1 2 3 22 22 H 1.08995 * 109.46885 * 185.96099 * 9 7 6 23 23 H 1.09001 * 109.47387 * 305.96096 * 9 7 6 24 24 H 1.09002 * 109.46849 * 65.96336 * 9 7 6 25 25 H 0.97006 * 120.00680 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0496 0.0000 4 7 3.5080 0.6812 0.0061 5 6 3.5690 -0.6288 0.0007 6 16 5.0347 -1.6068 0.0012 7 6 6.2855 -0.2985 0.0013 8 1 6.1103 0.3716 0.8430 9 6 6.1976 0.4912 -1.3062 10 6 7.6557 -0.9134 0.1256 11 1 7.8651 -1.8645 -0.3412 12 6 8.6403 -0.2647 0.8402 13 7 9.8475 -0.7810 0.9143 14 14 8.2594 1.3478 1.7030 15 1 7.6749 1.0682 3.0392 16 1 9.5111 2.1305 1.8642 17 1 7.2898 2.1264 0.8915 18 8 2.3032 -1.0873 0.0004 19 1 -0.3632 0.0004 1.0277 20 1 -0.3634 0.8897 -0.5142 21 1 -0.3633 -0.8903 -0.5134 22 1 7.0166 1.2089 -1.3529 23 1 6.2672 -0.1949 -2.1504 24 1 5.2465 1.0220 -1.3469 25 1 10.5402 -0.3247 1.4173 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051038128.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = 6.756832 kcal Electronic energy + Delta-G solvation = -12016.545844 eV Core-core repulsion = 9736.468026 eV Total energy + Delta-G solvation = -2280.077818 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 214.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.10411 -37.26580 -36.04564 -33.94058 -33.26379 -29.37803 -27.40691 -25.09903 -23.72806 -22.98517 -19.89051 -18.97136 -18.51508 -17.46381 -16.67666 -15.91708 -15.59695 -14.72324 -14.42444 -14.15002 -13.89542 -13.62268 -13.48497 -13.10321 -13.01953 -12.71885 -12.58484 -12.18291 -11.92479 -11.61184 -11.24389 -11.10283 -10.90818 -8.83068 -8.50369 -6.56838 -0.29388 0.00549 1.17929 1.24334 1.34104 1.38369 1.45515 1.87011 2.21950 2.92890 3.32077 3.87457 3.98508 4.23414 4.41538 4.51136 4.58690 4.71697 4.74063 5.01473 5.06650 5.30179 5.34872 5.96761 6.45248 7.04475 7.15107 8.62892 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.054460 B = 0.008874 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.015191 B = 3154.378562 C = 3410.118039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.160 3.840 3 N -0.321 5.321 4 N -0.322 5.322 5 C 0.137 3.863 6 S 0.013 5.987 7 C 0.045 3.955 8 H 0.058 0.942 9 C -0.134 4.134 10 C -0.504 4.504 11 H 0.058 0.942 12 C 0.047 3.953 13 N -0.911 5.911 14 Si 0.925 3.075 15 H -0.265 1.265 16 H -0.271 1.271 17 H -0.249 1.249 18 O -0.220 6.220 19 H 0.119 0.881 20 H 0.121 0.879 21 H 0.115 0.885 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.422 1.471 -1.021 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.056 4.056 3 N -0.167 5.167 4 N -0.173 5.173 5 C -0.180 4.180 6 S 0.248 5.752 7 C -0.083 4.083 8 H 0.077 0.923 9 C -0.194 4.194 10 C -0.547 4.547 11 H 0.076 0.924 12 C -0.158 4.158 13 N -0.548 5.548 14 Si 0.748 3.252 15 H -0.190 1.190 16 H -0.196 1.196 17 H -0.173 1.173 18 O -0.102 6.102 19 H 0.137 0.863 20 H 0.140 0.860 21 H 0.133 0.867 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.779 1.526 -0.947 15.881 hybrid contribution -0.023 0.576 0.452 0.732 sum -15.802 2.102 -0.496 15.949 Atomic orbital electron populations 1.20725 0.75709 1.07408 1.06985 1.29292 0.99631 0.78516 0.98122 1.74009 0.96253 1.27315 1.19103 1.74858 1.12832 1.08493 1.21090 1.30614 0.90062 0.94873 1.02424 1.86292 0.86402 1.12798 1.89677 1.21430 0.93485 0.93659 0.99717 0.92344 1.22161 1.00977 0.99667 0.96618 1.20498 0.92073 1.08002 1.34139 0.92416 1.25644 0.94340 1.00757 0.95049 1.69925 1.03412 1.40956 1.40495 0.86031 0.78916 0.80187 0.80040 1.18995 1.19604 1.17301 1.84997 1.15617 1.38420 1.71160 0.86255 0.86026 0.86654 0.92328 0.92194 0.92884 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.67 10.51 71.24 0.75 0.08 15 2 C 0.16 4.58 8.48 88.37 0.75 5.33 15 3 N -0.32 -11.73 12.20 -165.24 -2.02 -13.75 15 4 N -0.32 -13.52 9.76 -172.09 -1.68 -15.20 15 5 C 0.14 5.50 8.27 130.35 1.08 6.57 15 6 S 0.01 0.56 21.74 -56.49 -1.23 -0.67 15 7 C 0.04 2.10 1.90 29.85 0.06 2.16 15 8 H 0.06 2.83 5.40 -2.40 -0.01 2.81 15 9 C -0.13 -5.80 8.92 71.98 0.64 -5.16 15 10 C -0.50 -27.14 8.86 25.60 0.23 -26.92 15 11 H 0.06 3.39 8.06 -2.91 -0.02 3.36 15 12 C 0.05 2.57 5.47 84.65 0.46 3.03 15 13 N -0.91 -52.53 13.96 21.44 0.30 -52.23 15 14 Si 0.93 42.17 26.92 68.60 1.85 44.02 15 15 H -0.26 -11.84 7.11 99.48 0.71 -11.13 15 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 17 H -0.25 -11.08 6.91 99.48 0.69 -10.39 15 18 O -0.22 -7.49 10.90 -10.24 -0.11 -7.61 15 19 H 0.12 1.09 8.14 -2.39 -0.02 1.07 15 20 H 0.12 1.22 8.14 -2.39 -0.02 1.20 15 21 H 0.11 1.00 8.14 -2.38 -0.02 0.98 15 22 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.05 2.23 6.05 -2.39 -0.01 2.22 15 25 H 0.28 14.88 8.31 -92.70 -0.77 14.11 15 Total: -1.00 -64.55 237.55 2.26 -62.30 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: 1.18 Total: -1.97 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 3.96 Total: -14.90 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -3.40 Total: -81.17 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.11 Total: -7.61 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.85 Total: 44.02 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -1.23 Total: -0.67 kcal Total: -64.55 2.26 -62.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051038128.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.052 kcal (2) G-P(sol) polarization free energy of solvation -64.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds