Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 11 11 F 1.39906 * 109.46982 * 299.99938 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38262 * 119.99112 * 244.99564 * 12 9 7 14 14 C 1.38218 * 120.02663 * 180.02562 * 13 12 9 15 15 C 1.38226 * 120.01375 * 359.97438 * 14 13 12 16 16 C 1.38336 * 119.98794 * 359.97438 * 15 14 13 17 17 Cl 1.73600 * 120.01068 * 180.02562 * 16 15 14 18 18 C 1.38192 * 119.99623 * 64.72591 * 12 9 7 19 19 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 20 20 H 1.08006 * 119.98463 * 359.97438 * 13 12 9 21 21 H 1.08004 * 119.99175 * 180.02562 * 14 13 12 22 22 H 1.08007 * 120.00759 * 180.02562 * 15 14 13 23 23 H 1.07997 * 120.00512 * 0.02562 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 9 0.4472 -2.5736 1.1421 12 6 2.2305 -3.6445 -0.0005 13 6 2.2950 -4.4988 -1.0858 14 6 3.1926 -5.5498 -1.0863 15 6 4.0268 -5.7472 -0.0020 16 6 3.9635 -4.8922 1.0837 17 17 5.0114 -5.1392 2.4456 18 6 3.0678 -3.8375 1.0817 19 1 -0.4849 -0.8401 0.0004 20 1 1.6430 -4.3452 -1.9331 21 1 3.2428 -6.2165 -1.9346 22 1 4.7285 -6.5683 -0.0027 23 1 3.0201 -3.1679 1.9277 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259937351.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -51.019452 kcal Electronic energy + Delta-G solvation = -11766.053337 eV Core-core repulsion = 9325.673389 eV Total energy + Delta-G solvation = -2440.379949 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 214.026 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.10362 -38.80602 -36.18670 -33.31263 -31.31910 -30.35371 -26.63186 -23.41165 -22.20179 -20.78556 -17.40733 -16.66373 -15.45970 -15.16195 -14.11567 -13.89720 -13.76159 -13.56297 -13.24416 -12.96096 -11.89618 -11.59700 -11.14355 -11.11907 -10.91091 -10.84740 -10.59175 -10.18134 -9.75901 -8.84399 -8.63915 -8.45243 -8.20924 -6.56800 -4.41384 1.53548 1.67964 2.40753 3.37346 3.39799 3.56059 4.03217 4.40428 5.11333 5.14030 5.22444 5.45961 5.64451 5.80791 6.01568 6.24261 6.35321 6.59521 6.67252 6.81916 7.16848 7.39711 7.65059 8.20912 8.60122 9.39145 10.81476 Molecular weight = 214.03amu Principal moments of inertia in cm(-1) A = 0.035234 B = 0.009273 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.502858 B = 3018.950730 C = 3333.528354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.033 3.967 3 Si 1.077 2.923 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.636 4.636 8 H 0.063 0.937 9 C 0.233 3.767 10 H 0.042 0.958 11 F -0.236 7.236 12 C -0.061 4.061 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.127 4.127 16 C -0.038 4.038 17 Cl -0.086 7.086 18 C -0.084 4.084 19 H 0.276 0.724 20 H 0.125 0.875 21 H 0.126 0.874 22 H 0.125 0.875 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.797 -9.108 -0.679 11.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.175 4.175 3 Si 0.903 3.097 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.673 4.673 8 H 0.082 0.918 9 C 0.197 3.803 10 H 0.060 0.940 11 F -0.217 7.217 12 C -0.062 4.062 13 C -0.131 4.131 14 C -0.133 4.133 15 C -0.146 4.146 16 C -0.064 4.064 17 Cl -0.057 7.057 18 C -0.102 4.102 19 H 0.087 0.913 20 H 0.143 0.857 21 H 0.144 0.856 22 H 0.143 0.857 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.653 -7.495 -0.530 10.036 hybrid contribution 0.316 -1.753 0.173 1.790 sum 6.969 -9.249 -0.358 11.586 Atomic orbital electron populations 1.70700 1.06936 1.31582 1.43207 1.26004 0.96376 1.03006 0.92078 0.83441 0.74673 0.74400 0.77143 1.21025 1.20666 1.21143 1.22240 0.95018 0.90430 1.59601 0.91849 1.18275 0.86587 0.92445 0.83018 0.94001 1.92765 1.76040 1.97447 1.55482 1.20755 0.96839 0.95588 0.93013 1.21175 0.99027 0.94422 0.98445 1.20974 0.96176 0.98300 0.97839 1.20874 1.00938 0.99704 0.93079 1.20909 0.96441 0.98949 0.90124 1.98330 1.66056 1.96520 1.44809 1.20959 0.93712 0.95778 0.99779 0.91301 0.85674 0.85587 0.85662 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.56 55.43 0.75 -25.90 14 2 C 0.03 0.94 5.42 -17.82 -0.10 0.84 14 3 Si 1.08 24.69 29.90 -169.99 -5.08 19.60 14 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 14 7 C -0.64 -17.58 8.60 -34.44 -0.30 -17.88 14 8 H 0.06 1.74 7.71 -52.48 -0.40 1.34 14 9 C 0.23 5.91 2.94 -29.03 -0.09 5.82 14 10 H 0.04 1.07 7.75 -51.93 -0.40 0.67 14 11 F -0.24 -6.41 15.82 2.25 0.04 -6.38 14 12 C -0.06 -1.31 4.99 -104.63 -0.52 -1.83 14 13 C -0.11 -2.01 9.67 -39.58 -0.38 -2.39 14 14 C -0.11 -1.72 10.04 -39.59 -0.40 -2.12 14 15 C -0.13 -1.93 9.83 -39.55 -0.39 -2.32 14 16 C -0.04 -0.66 6.32 -39.50 -0.25 -0.91 14 17 Cl -0.09 -1.32 28.96 -51.86 -1.50 -2.82 14 18 C -0.08 -1.70 9.07 -39.55 -0.36 -2.06 14 19 H 0.28 8.29 6.59 -40.82 -0.27 8.02 14 20 H 0.13 2.02 7.95 -52.48 -0.42 1.61 14 21 H 0.13 1.45 8.06 -52.48 -0.42 1.02 14 22 H 0.13 1.55 8.06 -52.48 -0.42 1.13 14 23 H 0.14 2.89 8.06 -52.49 -0.42 2.47 14 LS Contribution 230.64 15.07 3.48 3.48 Total: -1.00 -29.64 230.64 -6.66 -36.30 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -1.56 Total: -1.43 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.78 Total: -22.85 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.75 Total: -25.90 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.04 Total: -6.38 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.60 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.64 -6.66 -36.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937351.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.720 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds