Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 11 11 F 1.39906 * 109.46982 * 299.99938 * 9 7 2 12 12 C 1.50701 * 109.46789 * 180.02562 * 9 7 2 13 13 C 1.38262 * 119.99112 * 244.99564 * 12 9 7 14 14 C 1.38218 * 120.02663 * 180.02562 * 13 12 9 15 15 C 1.38226 * 120.01375 * 359.97438 * 14 13 12 16 16 C 1.38336 * 119.98794 * 359.97438 * 15 14 13 17 17 Cl 1.73600 * 120.01068 * 180.02562 * 16 15 14 18 18 C 1.38192 * 119.99623 * 64.72591 * 12 9 7 19 19 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 20 20 H 1.08006 * 119.98463 * 359.97438 * 13 12 9 21 21 H 1.08004 * 119.99175 * 180.02562 * 14 13 12 22 22 H 1.08007 * 120.00759 * 180.02562 * 15 14 13 23 23 H 1.07997 * 120.00512 * 0.02562 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 9 0.4472 -2.5736 1.1421 12 6 2.2305 -3.6445 -0.0005 13 6 2.2950 -4.4988 -1.0858 14 6 3.1926 -5.5498 -1.0863 15 6 4.0268 -5.7472 -0.0020 16 6 3.9635 -4.8922 1.0837 17 17 5.0114 -5.1392 2.4456 18 6 3.0678 -3.8375 1.0817 19 1 -0.4849 -0.8401 0.0004 20 1 1.6430 -4.3452 -1.9331 21 1 3.2428 -6.2165 -1.9346 22 1 4.7285 -6.5683 -0.0027 23 1 3.0201 -3.1679 1.9277 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259937351.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -67.417934 kcal Electronic energy + Delta-G solvation = -11766.764429 eV Core-core repulsion = 9325.673389 eV Total energy + Delta-G solvation = -2441.091040 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 214.026 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.20805 -40.19601 -37.48164 -35.37252 -32.93895 -31.72335 -28.51621 -25.32125 -23.59180 -22.39564 -19.44406 -18.18673 -17.11263 -16.67323 -15.93183 -15.74949 -15.48114 -15.39367 -14.61393 -14.40406 -13.86499 -13.28410 -12.74032 -12.64179 -12.48408 -12.45824 -12.10527 -11.94219 -11.54077 -10.77996 -10.75490 -9.89465 -9.68651 -8.80192 -6.66317 0.15943 0.29368 1.09275 1.50798 1.58943 1.77993 2.47229 2.65560 3.03351 3.65866 3.87980 4.08937 4.21122 4.31613 4.49626 4.69037 4.87120 5.09266 5.22078 5.31967 5.54092 5.67675 5.83592 5.97866 6.33379 7.22746 8.56483 Molecular weight = 214.03amu Principal moments of inertia in cm(-1) A = 0.035234 B = 0.009273 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.502858 B = 3018.950730 C = 3333.528354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.018 4.018 3 Si 1.123 2.877 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.644 4.644 8 H 0.060 0.940 9 C 0.224 3.776 10 H 0.031 0.969 11 F -0.252 7.252 12 C -0.094 4.094 13 C -0.118 4.118 14 C -0.096 4.096 15 C -0.112 4.112 16 C -0.042 4.042 17 Cl -0.069 7.069 18 C -0.106 4.106 19 H 0.261 0.739 20 H 0.137 0.863 21 H 0.175 0.825 22 H 0.165 0.835 23 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 -10.523 -1.552 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.219 4.219 3 Si 0.943 3.057 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.681 4.681 8 H 0.078 0.922 9 C 0.189 3.811 10 H 0.049 0.951 11 F -0.233 7.233 12 C -0.094 4.094 13 C -0.137 4.137 14 C -0.114 4.114 15 C -0.131 4.131 16 C -0.069 4.069 17 Cl -0.041 7.041 18 C -0.125 4.125 19 H 0.071 0.929 20 H 0.155 0.845 21 H 0.192 0.808 22 H 0.183 0.817 23 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.619 -8.937 -1.401 12.495 hybrid contribution -0.247 -1.446 0.458 1.537 sum 8.373 -10.384 -0.943 13.372 Atomic orbital electron populations 1.70833 1.07934 1.30677 1.45774 1.27547 0.96437 1.06915 0.91017 0.82881 0.74319 0.70610 0.77939 1.19934 1.20087 1.19019 1.22557 0.95052 0.91810 1.58694 0.92205 1.18304 0.87045 0.93898 0.81885 0.95090 1.92710 1.76722 1.97601 1.56291 1.20449 0.97473 0.96083 0.95440 1.21392 1.00051 0.94681 0.97528 1.21460 0.93853 0.97103 0.98934 1.21385 1.00617 0.99410 0.91647 1.20995 0.96004 0.98391 0.91504 1.98334 1.65207 1.96324 1.44188 1.20776 0.95494 0.97193 0.99034 0.92874 0.84530 0.80806 0.81734 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.47 13.56 21.45 0.29 -56.17 14 2 C -0.02 -1.03 5.42 84.65 0.46 -0.57 14 3 Si 1.12 49.74 29.90 68.60 2.05 51.79 14 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 14 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 14 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 14 7 C -0.64 -36.59 8.60 25.60 0.22 -36.37 14 8 H 0.06 3.36 7.71 -2.91 -0.02 3.33 14 9 C 0.22 11.84 2.94 29.10 0.09 11.93 14 10 H 0.03 1.67 7.75 -2.39 -0.02 1.65 14 11 F -0.25 -14.37 15.82 44.97 0.71 -13.66 14 12 C -0.09 -4.06 4.99 -19.87 -0.10 -4.16 14 13 C -0.12 -4.03 9.67 22.27 0.22 -3.82 14 14 C -0.10 -2.45 10.04 22.26 0.22 -2.23 14 15 C -0.11 -2.93 9.83 22.29 0.22 -2.71 14 16 C -0.04 -1.39 6.32 22.32 0.14 -1.25 14 17 Cl -0.07 -2.00 28.96 -2.72 -0.08 -2.08 14 18 C -0.11 -4.36 9.07 22.29 0.20 -4.15 14 19 H 0.26 16.41 6.59 -92.71 -0.61 15.80 14 20 H 0.14 4.22 7.95 -2.91 -0.02 4.20 14 21 H 0.17 2.86 8.06 -2.91 -0.02 2.83 14 22 H 0.17 3.07 8.06 -2.91 -0.02 3.05 14 23 H 0.11 4.89 8.06 -2.91 -0.02 4.87 14 Total: -1.00 -65.92 230.64 6.02 -59.90 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.38 Total: 3.55 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 1.67 Total: -43.33 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.29 Total: -56.17 kcal Atomic # 9 Polarization: -14.37 SS G_CDS: 0.71 Total: -13.66 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.08 Total: -2.08 kcal Total: -65.92 6.02 -59.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937351.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.514 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds