Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.30926 * 125.05497 * 235.36854 * 3 2 1 5 5 C 1.34910 * 108.85022 * 180.09833 * 4 3 2 6 6 C 1.40233 * 133.49320 * 179.21856 * 5 4 3 7 7 C 1.38099 * 120.26445 * 179.97438 * 6 5 4 8 8 C 1.38006 * 120.78481 * 0.02562 * 7 6 5 9 9 C 1.40641 * 120.22800 * 359.97438 * 8 7 6 10 10 C 1.41054 * 120.31128 * 180.02562 * 9 8 7 11 11 H 1.08010 * 119.99777 * 205.10046 * 10 9 8 12 12 C 1.39992 * 120.00353 * 25.09307 * 10 9 8 13 13 N 1.30827 * 120.00435 * 205.34386 * 12 10 9 14 14 Si 1.86800 * 119.99821 * 25.34877 * 12 10 9 15 15 H 1.48497 * 109.47130 * 263.83042 * 14 12 10 16 16 H 1.48498 * 109.47155 * 23.83091 * 14 12 10 17 17 H 1.48504 * 109.47476 * 143.83433 * 14 12 10 18 18 C 1.40209 * 106.77089 * 359.48494 * 5 4 3 19 19 O 1.34692 * 106.53361 * 0.14697 * 18 5 4 20 20 H 1.08002 * 119.86553 * 359.97438 * 6 5 4 21 21 H 1.07999 * 119.60624 * 179.97438 * 7 6 5 22 22 H 1.07999 * 119.89004 * 179.97438 * 8 7 6 23 23 H 0.96998 * 119.99819 * 353.11035 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 7 3.3197 0.6101 0.8819 5 6 4.6153 0.3985 0.5708 6 6 5.8258 0.8133 1.1445 7 6 7.0287 0.4262 0.5876 8 6 7.0617 -0.3714 -0.5382 9 6 5.8638 -0.8030 -1.1355 10 6 5.8954 -1.6187 -2.2858 11 1 5.0585 -1.6220 -2.9687 12 6 7.0115 -2.4238 -2.5426 13 7 7.2915 -2.7820 -3.7693 14 14 8.1009 -2.9869 -1.1335 15 1 9.2636 -2.0714 -1.0104 16 1 7.3224 -2.9711 0.1309 17 1 8.5829 -4.3658 -1.4009 18 6 4.6295 -0.4070 -0.5767 19 8 3.3422 -0.6366 -0.8999 20 1 5.8172 1.4381 2.0254 21 1 7.9546 0.7521 1.0379 22 1 8.0106 -0.6653 -0.9620 23 1 6.6736 -2.5752 -4.4879 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307352243.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = 47.348000 kcal Electronic energy + Delta-G solvation = -12990.450323 eV Core-core repulsion = 10576.688719 eV Total energy + Delta-G solvation = -2413.761605 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 214.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.26320 -38.87010 -38.02089 -36.39398 -35.22580 -32.04812 -31.05042 -27.04098 -26.15530 -23.87882 -22.32835 -20.83268 -20.11930 -18.76101 -17.97417 -17.48983 -16.14243 -15.88108 -15.09856 -14.91482 -14.84497 -14.76180 -14.29084 -14.25765 -13.30576 -13.10969 -12.85331 -12.54484 -12.26071 -11.84127 -11.63399 -11.52513 -10.89926 -9.78480 -9.55644 -9.32998 -6.70170 -0.65420 0.57818 0.59020 0.90666 1.29854 1.41310 1.59064 1.81568 1.96831 2.15449 2.50367 2.54403 3.19934 3.71073 3.97462 4.35845 4.50864 4.64971 4.75933 5.06860 5.27710 5.33366 5.58137 5.68998 5.75766 5.82314 6.07265 6.18718 6.46380 6.60087 7.78522 Molecular weight = 214.05amu Principal moments of inertia in cm(-1) A = 0.036728 B = 0.010428 C = 0.008623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.169456 B = 2684.345702 C = 3246.333886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C 0.331 3.669 3 C 0.274 3.726 4 N -0.428 5.428 5 C 0.047 3.953 6 C -0.195 4.195 7 C -0.040 4.040 8 C -0.255 4.255 9 C 0.106 3.894 10 C -0.527 4.527 11 H 0.049 0.951 12 C 0.018 3.982 13 N -0.809 5.809 14 Si 1.098 2.902 15 H -0.237 1.237 16 H -0.258 1.258 17 H -0.279 1.279 18 C -0.070 4.070 19 O -0.198 6.198 20 H 0.144 0.856 21 H 0.163 0.837 22 H 0.131 0.869 23 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 2.762 6.756 7.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.030 5.030 2 C 0.013 3.987 3 C 0.066 3.934 4 N -0.163 5.163 5 C -0.068 4.068 6 C -0.215 4.215 7 C -0.059 4.059 8 C -0.275 4.275 9 C 0.103 3.897 10 C -0.555 4.555 11 H 0.068 0.932 12 C -0.200 4.200 13 N -0.430 5.430 14 Si 0.915 3.085 15 H -0.161 1.161 16 H -0.182 1.182 17 H -0.205 1.205 18 C -0.121 4.121 19 O -0.086 6.086 20 H 0.162 0.838 21 H 0.181 0.819 22 H 0.148 0.852 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.013 2.242 7.381 7.780 hybrid contribution -1.369 0.258 -1.859 2.323 sum -0.356 2.501 5.522 6.072 Atomic orbital electron populations 1.81302 1.09292 1.06580 1.05834 1.22089 0.87463 0.94530 0.94646 1.19128 0.87574 0.97637 0.89069 1.70351 1.02223 1.20204 1.23565 1.19841 0.91477 1.00049 0.95447 1.20053 0.87464 1.09309 1.04709 1.21003 0.97990 0.93724 0.93198 1.21039 0.95414 1.08361 1.02668 1.16900 0.86997 0.93246 0.92598 1.20646 1.05123 1.22955 1.06746 0.93244 1.28599 0.97676 0.91608 1.02111 1.70590 1.33477 1.37924 1.00959 0.83332 0.75879 0.77209 0.72032 1.16139 1.18233 1.20514 1.21151 0.82364 1.08124 1.00436 1.84348 1.16807 1.59908 1.47489 0.83786 0.81917 0.85199 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.35 -11.24 18.54 19.00 0.35 -10.89 14 2 C 0.33 10.93 16.00 88.33 1.41 12.34 14 3 C 0.27 10.54 7.91 86.07 0.68 11.22 14 4 N -0.43 -16.97 11.33 -301.89 -3.42 -20.39 14 5 C 0.05 1.97 7.21 39.63 0.29 2.25 14 6 C -0.20 -6.92 10.11 22.72 0.23 -6.69 14 7 C -0.04 -1.34 9.99 22.18 0.22 -1.12 14 8 C -0.26 -10.33 7.42 22.80 0.17 -10.16 14 9 C 0.11 5.05 5.17 -21.29 -0.11 4.94 14 10 C -0.53 -27.26 9.38 23.39 0.22 -27.04 14 11 H 0.05 2.78 8.06 -2.91 -0.02 2.76 14 12 C 0.02 0.87 5.32 85.27 0.45 1.32 14 13 N -0.81 -40.70 13.65 21.84 0.30 -40.40 14 14 Si 1.10 42.07 25.04 68.60 1.72 43.79 14 15 H -0.24 -7.84 6.64 99.48 0.66 -7.18 14 16 H -0.26 -9.80 7.06 99.48 0.70 -9.10 14 17 H -0.28 -10.36 7.11 99.48 0.71 -9.65 14 18 C -0.07 -3.26 7.17 23.47 0.17 -3.09 14 19 O -0.20 -8.86 10.79 -10.59 -0.11 -8.97 14 20 H 0.14 4.21 8.06 -2.91 -0.02 4.19 14 21 H 0.16 3.90 8.06 -2.91 -0.02 3.87 14 22 H 0.13 4.97 4.63 -2.91 -0.01 4.96 14 23 H 0.28 14.26 8.73 -92.71 -0.81 13.45 14 Total: -1.00 -53.32 223.37 3.74 -49.58 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.18 Total: 3.30 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 3.73 Total: -16.02 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -2.77 Total: -71.68 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.11 Total: -8.97 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.72 Total: 43.79 kcal Total: -53.32 3.74 -49.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307352243.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.925 kcal (2) G-P(sol) polarization free energy of solvation -53.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds