Wall clock time and date at job start Mon Mar 30 2020 02:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38165 * 120.30984 * 2 1 4 4 C 1.38810 * 119.75472 * 2.32732 * 3 2 1 5 5 H 1.08000 * 120.00331 * 26.36223 * 4 3 2 6 6 C 1.40660 * 119.99826 * 206.37348 * 4 3 2 7 7 N 1.30536 * 120.00384 * 9.62108 * 6 4 3 8 8 Si 1.86807 * 119.99774 * 189.62689 * 6 4 3 9 9 H 1.48500 * 109.47080 * 89.99837 * 8 6 4 10 10 H 1.48502 * 109.47041 * 209.99307 * 8 6 4 11 11 H 1.48494 * 109.47105 * 329.99669 * 8 6 4 12 12 C 1.50474 * 120.48799 * 182.32067 * 3 2 1 13 13 C 1.52638 * 110.66239 * 324.19547 * 12 3 2 14 14 C 1.50533 * 110.31707 * 50.35113 * 13 12 3 15 15 C 1.37691 * 120.44031 * 144.80094 * 14 13 12 16 16 C 1.38569 * 120.10600 * 177.46492 * 15 14 13 17 17 C 1.38563 * 120.54230 * 359.71062 * 16 15 14 18 18 C 1.37821 * 120.18280 * 0.76503 * 17 16 15 19 19 C 1.40060 * 119.61960 * 0.54366 * 18 17 16 20 20 H 1.08998 * 109.47396 * 185.06595 * 1 2 3 21 21 H 1.09006 * 109.46902 * 305.07020 * 1 2 3 22 22 H 1.08998 * 109.47180 * 65.06273 * 1 2 3 23 23 H 0.96998 * 119.99946 * 174.99650 * 7 6 4 24 24 H 1.09003 * 109.24083 * 203.89286 * 12 3 2 25 25 H 1.09005 * 109.24155 * 84.50090 * 12 3 2 26 26 H 1.08999 * 109.32882 * 290.08916 * 13 12 3 27 27 H 1.08995 * 109.18991 * 170.52162 * 13 12 3 28 28 H 1.07995 * 119.94804 * 357.45879 * 15 14 13 29 29 H 1.07993 * 119.72479 * 179.69369 * 16 15 14 30 30 H 1.07998 * 119.91199 * 180.79350 * 17 16 15 31 31 H 1.08005 * 120.18670 * 180.56269 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1928 0.0000 4 6 1.5124 2.3952 0.0489 5 1 0.5319 2.4361 0.4998 6 6 2.0883 3.5603 -0.4890 7 7 3.1818 3.4808 -1.1974 8 14 1.2884 5.2216 -0.1893 9 1 1.8410 5.8204 1.0522 10 1 1.5672 6.1198 -1.3385 11 1 -0.1788 5.0454 -0.0433 12 6 3.7081 1.1980 -0.0525 13 6 4.2788 0.0248 0.7397 14 6 3.6100 -1.2592 0.3271 15 6 4.3232 -2.4364 0.2893 16 6 3.6886 -3.6232 -0.0407 17 6 2.3335 -3.6405 -0.3296 18 6 1.6052 -2.4707 -0.3065 19 6 2.2449 -1.2628 -0.0006 20 1 -0.3634 -1.0236 0.0907 21 1 -0.3633 0.5905 0.8411 22 1 -0.3633 0.4333 -0.9318 23 1 3.5390 4.2728 -1.6287 24 1 4.0791 2.1315 0.3708 25 1 4.0316 1.1216 -1.0906 26 1 4.1119 0.1927 1.8037 27 1 5.3495 -0.0489 0.5497 28 1 5.3788 -2.4348 0.5172 29 1 4.2549 -4.5422 -0.0733 30 1 1.8466 -4.5732 -0.5731 31 1 0.5471 -2.4854 -0.5228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034070333.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:51 Heat of formation + Delta-G solvation = 4.954545 kcal Electronic energy + Delta-G solvation = -13781.998077 eV Core-core repulsion = 11605.771592 eV Total energy + Delta-G solvation = -2176.226485 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.62684 -35.75453 -33.13994 -32.19316 -29.32929 -28.68462 -26.42396 -24.60201 -22.14062 -21.19883 -19.82643 -18.05479 -15.81700 -15.58240 -15.13912 -14.11661 -14.03218 -13.28118 -12.95933 -12.67225 -12.20780 -11.94508 -11.65262 -11.54989 -11.37006 -11.24442 -10.81267 -10.75591 -10.48305 -10.37757 -10.16536 -9.48388 -9.20723 -9.05600 -8.34508 -7.79989 -7.10176 -6.72703 -4.39326 2.20117 2.42894 2.86480 2.93739 2.97566 3.66812 3.75255 4.72302 5.21208 5.74030 5.79513 5.95238 6.08629 6.24870 6.40564 6.51548 6.52893 6.56866 6.79414 6.82832 6.87599 7.00365 7.13652 7.13886 7.15571 7.37215 7.43663 7.48012 7.57705 7.62200 7.93774 8.12336 8.22429 8.29520 8.84500 8.92408 9.86555 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.048625 B = 0.008943 C = 0.007846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.699781 B = 3130.113385 C = 3567.837662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.368 4.368 3 C 0.119 3.881 4 C -0.426 4.426 5 H 0.087 0.913 6 C 0.069 3.931 7 N -0.778 5.778 8 Si 0.917 3.083 9 H -0.265 1.265 10 H -0.275 1.275 11 H -0.259 1.259 12 C -0.062 4.062 13 C -0.070 4.070 14 C -0.141 4.141 15 C -0.100 4.100 16 C -0.203 4.203 17 C -0.107 4.107 18 C -0.183 4.183 19 C 0.064 3.936 20 H 0.030 0.970 21 H 0.030 0.970 22 H 0.029 0.971 23 H 0.288 0.712 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 -1.753 1.323 2.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.370 4.370 3 C 0.116 3.884 4 C -0.453 4.453 5 H 0.105 0.895 6 C -0.153 4.153 7 N -0.402 5.402 8 Si 0.741 3.259 9 H -0.190 1.190 10 H -0.200 1.200 11 H -0.182 1.182 12 C -0.099 4.099 13 C -0.107 4.107 14 C -0.141 4.141 15 C -0.118 4.118 16 C -0.221 4.221 17 C -0.125 4.125 18 C -0.201 4.201 19 C 0.063 3.937 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.790 -1.565 1.231 2.142 hybrid contribution -0.256 0.677 -0.039 0.725 sum 0.534 -0.888 1.191 1.579 Atomic orbital electron populations 1.19901 0.93943 0.97916 0.98625 1.19672 0.92992 0.89929 1.34447 1.19052 0.92308 0.92029 0.85017 1.19650 1.03374 0.91903 1.30345 0.89489 1.26325 0.93710 1.01923 0.93312 1.69666 1.17012 1.32603 1.20871 0.86149 0.80814 0.79888 0.79072 1.18979 1.19961 1.18223 1.20255 0.94433 0.95577 0.99667 1.20327 0.97654 0.93231 0.99480 1.19906 0.94393 0.94435 1.05395 1.20646 0.98181 0.92564 1.00456 1.20628 0.94979 0.96944 1.09580 1.20757 0.94270 0.97025 1.00430 1.21003 0.99103 0.92362 1.07630 1.18700 0.91596 0.92963 0.90401 0.95132 0.95149 0.95171 0.90116 0.91213 0.91536 0.92565 0.92870 0.88115 0.88378 0.88258 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.07 8.88 36.01 0.32 -0.75 16 2 C -0.37 -9.18 6.04 -101.43 -0.61 -9.79 16 3 C 0.12 3.04 5.47 -104.55 -0.57 2.46 16 4 C -0.43 -10.61 8.35 -38.46 -0.32 -10.93 16 5 H 0.09 2.13 6.68 -52.49 -0.35 1.78 16 6 C 0.07 1.59 5.16 -17.19 -0.09 1.50 16 7 N -0.78 -18.39 10.77 55.59 0.60 -17.79 16 8 Si 0.92 17.41 29.58 -169.99 -5.03 12.39 16 9 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 10 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 11 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 12 C -0.06 -1.48 4.27 -28.18 -0.12 -1.60 16 13 C -0.07 -1.50 5.91 -28.15 -0.17 -1.67 16 14 C -0.14 -3.19 5.67 -104.09 -0.59 -3.78 16 15 C -0.10 -2.03 9.68 -39.66 -0.38 -2.42 16 16 C -0.20 -3.91 10.04 -39.34 -0.40 -4.30 16 17 C -0.11 -2.09 10.03 -39.61 -0.40 -2.49 16 18 C -0.18 -3.98 9.37 -39.05 -0.37 -4.34 16 19 C 0.06 1.53 5.79 -105.18 -0.61 0.92 16 20 H 0.03 0.62 6.05 -51.93 -0.31 0.31 16 21 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 24 H 0.07 1.67 6.81 -51.93 -0.35 1.31 16 25 H 0.07 1.67 7.92 -51.93 -0.41 1.26 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.11 2.20 6.40 -52.48 -0.34 1.87 16 LS Contribution 254.39 15.07 3.83 3.83 Total: -1.00 -25.82 254.39 -8.72 -34.54 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.82 Total: 4.22 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: -4.30 Total: -37.19 kcal Atomic # 7 Polarization: -18.39 SS G_CDS: 0.60 Total: -17.79 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.82 -8.72 -34.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034070333.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.494 kcal (2) G-P(sol) polarization free energy of solvation -25.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds