Wall clock time and date at job start Mon Mar 30 2020 02:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38165 * 120.30984 * 2 1 4 4 C 1.38810 * 119.75472 * 2.32732 * 3 2 1 5 5 H 1.08000 * 120.00331 * 26.36223 * 4 3 2 6 6 C 1.40660 * 119.99826 * 206.37348 * 4 3 2 7 7 N 1.30536 * 120.00384 * 9.62108 * 6 4 3 8 8 Si 1.86807 * 119.99774 * 189.62689 * 6 4 3 9 9 H 1.48500 * 109.47080 * 89.99837 * 8 6 4 10 10 H 1.48502 * 109.47041 * 209.99307 * 8 6 4 11 11 H 1.48494 * 109.47105 * 329.99669 * 8 6 4 12 12 C 1.50474 * 120.48799 * 182.32067 * 3 2 1 13 13 C 1.52638 * 110.66239 * 324.19547 * 12 3 2 14 14 C 1.50533 * 110.31707 * 50.35113 * 13 12 3 15 15 C 1.37691 * 120.44031 * 144.80094 * 14 13 12 16 16 C 1.38569 * 120.10600 * 177.46492 * 15 14 13 17 17 C 1.38563 * 120.54230 * 359.71062 * 16 15 14 18 18 C 1.37821 * 120.18280 * 0.76503 * 17 16 15 19 19 C 1.40060 * 119.61960 * 0.54366 * 18 17 16 20 20 H 1.08998 * 109.47396 * 185.06595 * 1 2 3 21 21 H 1.09006 * 109.46902 * 305.07020 * 1 2 3 22 22 H 1.08998 * 109.47180 * 65.06273 * 1 2 3 23 23 H 0.96998 * 119.99946 * 174.99650 * 7 6 4 24 24 H 1.09003 * 109.24083 * 203.89286 * 12 3 2 25 25 H 1.09005 * 109.24155 * 84.50090 * 12 3 2 26 26 H 1.08999 * 109.32882 * 290.08916 * 13 12 3 27 27 H 1.08995 * 109.18991 * 170.52162 * 13 12 3 28 28 H 1.07995 * 119.94804 * 357.45879 * 15 14 13 29 29 H 1.07993 * 119.72479 * 179.69369 * 16 15 14 30 30 H 1.07998 * 119.91199 * 180.79350 * 17 16 15 31 31 H 1.08005 * 120.18670 * 180.56269 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1928 0.0000 4 6 1.5124 2.3952 0.0489 5 1 0.5319 2.4361 0.4998 6 6 2.0883 3.5603 -0.4890 7 7 3.1818 3.4808 -1.1974 8 14 1.2884 5.2216 -0.1893 9 1 1.8410 5.8204 1.0522 10 1 1.5672 6.1198 -1.3385 11 1 -0.1788 5.0454 -0.0433 12 6 3.7081 1.1980 -0.0525 13 6 4.2788 0.0248 0.7397 14 6 3.6100 -1.2592 0.3271 15 6 4.3232 -2.4364 0.2893 16 6 3.6886 -3.6232 -0.0407 17 6 2.3335 -3.6405 -0.3296 18 6 1.6052 -2.4707 -0.3065 19 6 2.2449 -1.2628 -0.0006 20 1 -0.3634 -1.0236 0.0907 21 1 -0.3633 0.5905 0.8411 22 1 -0.3633 0.4333 -0.9318 23 1 3.5390 4.2728 -1.6287 24 1 4.0791 2.1315 0.3708 25 1 4.0316 1.1216 -1.0906 26 1 4.1119 0.1927 1.8037 27 1 5.3495 -0.0489 0.5497 28 1 5.3788 -2.4348 0.5172 29 1 4.2549 -4.5422 -0.0733 30 1 1.8466 -4.5732 -0.5731 31 1 0.5471 -2.4854 -0.5228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034070333.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:51 Heat of formation + Delta-G solvation = -6.009248 kcal Electronic energy + Delta-G solvation = -13782.473502 eV Core-core repulsion = 11605.771592 eV Total energy + Delta-G solvation = -2176.701911 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.31184 -37.48860 -34.87334 -33.93468 -31.04836 -30.37467 -28.20158 -26.37473 -23.85776 -22.90055 -21.53267 -19.79182 -17.62211 -17.20393 -16.80500 -15.79826 -15.71351 -14.93096 -14.69537 -14.32465 -13.89461 -13.68498 -13.31744 -13.26009 -13.05776 -12.88533 -12.50989 -12.42030 -12.15336 -12.04250 -11.82670 -11.19892 -10.96816 -10.82405 -10.08080 -9.42341 -8.84700 -8.52561 -6.24499 0.51732 0.79308 1.33287 1.37675 1.50061 1.97087 2.15702 2.98024 3.44505 4.12219 4.24940 4.39107 4.45635 4.60330 4.67803 4.77535 4.87769 4.89650 5.04398 5.08418 5.14238 5.17667 5.30133 5.35734 5.48170 5.55537 5.69765 5.81700 5.86039 5.94875 6.13407 6.39147 6.45703 6.54050 7.01728 7.08857 8.15669 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.048625 B = 0.008943 C = 0.007846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.699781 B = 3130.113385 C = 3567.837662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.393 4.393 3 C 0.087 3.913 4 C -0.458 4.458 5 H 0.080 0.920 6 C 0.033 3.967 7 N -0.805 5.805 8 Si 0.986 3.014 9 H -0.258 1.258 10 H -0.263 1.263 11 H -0.261 1.261 12 C -0.049 4.049 13 C -0.066 4.066 14 C -0.162 4.162 15 C -0.106 4.106 16 C -0.191 4.191 17 C -0.108 4.108 18 C -0.192 4.192 19 C 0.026 3.974 20 H 0.045 0.955 21 H 0.027 0.973 22 H 0.022 0.978 23 H 0.296 0.704 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -3.003 1.485 3.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.395 4.395 3 C 0.084 3.916 4 C -0.486 4.486 5 H 0.098 0.902 6 C -0.186 4.186 7 N -0.429 5.429 8 Si 0.806 3.194 9 H -0.183 1.183 10 H -0.188 1.188 11 H -0.184 1.184 12 C -0.086 4.086 13 C -0.103 4.103 14 C -0.162 4.162 15 C -0.123 4.123 16 C -0.209 4.209 17 C -0.126 4.126 18 C -0.210 4.210 19 C 0.026 3.974 20 H 0.064 0.936 21 H 0.046 0.954 22 H 0.040 0.960 23 H 0.108 0.892 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.346 -2.838 1.392 3.436 hybrid contribution -0.372 0.823 -0.103 0.910 sum 0.974 -2.014 1.289 2.582 Atomic orbital electron populations 1.19830 0.93102 0.98652 0.98059 1.20092 0.94093 0.90673 1.34678 1.19397 0.93239 0.92723 0.86268 1.19782 1.03602 0.93081 1.32091 0.90214 1.27080 0.94157 1.04876 0.92443 1.69701 1.17970 1.33967 1.21249 0.85125 0.79500 0.75378 0.79352 1.18257 1.18769 1.18436 1.20070 0.93885 0.96168 0.98462 1.20300 0.98800 0.92253 0.98948 1.20157 0.94338 0.95662 1.06027 1.21015 0.99593 0.92034 0.99707 1.21148 0.95081 0.97975 1.06667 1.21180 0.94648 0.97564 0.99188 1.21225 0.99736 0.92589 1.07475 1.18975 0.92652 0.93389 0.92379 0.93617 0.95393 0.95952 0.89235 0.92258 0.93804 0.92602 0.90515 0.85309 0.84591 0.84704 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.85 8.88 71.24 0.63 -1.22 16 2 C -0.39 -20.18 6.04 -17.80 -0.11 -20.29 16 3 C 0.09 4.60 5.47 -19.82 -0.11 4.49 16 4 C -0.46 -23.79 8.35 23.00 0.19 -23.60 16 5 H 0.08 4.09 6.68 -2.91 -0.02 4.07 16 6 C 0.03 1.57 5.16 85.48 0.44 2.01 16 7 N -0.80 -38.99 10.77 21.96 0.24 -38.75 16 8 Si 0.99 35.97 29.58 68.60 2.03 38.00 16 9 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 10 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 11 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 12 C -0.05 -2.39 4.27 29.66 0.13 -2.26 16 13 C -0.07 -2.84 5.91 29.68 0.18 -2.66 16 14 C -0.16 -7.18 5.67 -19.52 -0.11 -7.29 16 15 C -0.11 -3.96 9.68 22.22 0.22 -3.75 16 16 C -0.19 -6.52 10.04 22.43 0.23 -6.30 16 17 C -0.11 -3.85 10.03 22.25 0.22 -3.62 16 18 C -0.19 -8.09 9.37 22.61 0.21 -7.87 16 19 C 0.03 1.26 5.79 -20.23 -0.12 1.14 16 20 H 0.04 1.90 6.05 -2.39 -0.01 1.88 16 21 H 0.03 1.26 7.38 -2.38 -0.02 1.24 16 22 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.30 12.83 8.30 -92.71 -0.77 12.06 16 24 H 0.06 2.95 6.81 -2.39 -0.02 2.93 16 25 H 0.04 2.30 7.92 -2.38 -0.02 2.28 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 2.86 8.05 -2.39 -0.02 2.84 16 28 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 29 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.11 4.50 6.40 -2.91 -0.02 4.48 16 Total: -1.00 -56.24 254.39 5.38 -50.86 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 1.12 Total: 21.11 kcal Atomic # 6 Polarization: -73.22 SS G_CDS: 2.00 Total: -71.22 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.24 Total: -38.75 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -56.24 5.38 -50.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034070333.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.852 kcal (2) G-P(sol) polarization free energy of solvation -56.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds