Wall clock time and date at job start Mon Mar 30 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47139 * 2 1 4 4 C 1.50701 * 109.47182 * 120.00504 * 2 1 3 5 5 H 1.08007 * 119.99840 * 117.19602 * 4 2 1 6 6 C 1.37869 * 120.00081 * 297.20005 * 4 2 1 7 7 N 1.31521 * 119.99858 * 347.95131 * 6 4 2 8 8 Si 1.86802 * 120.00461 * 167.95334 * 6 4 2 9 9 H 1.48500 * 109.46715 * 270.00079 * 8 6 4 10 10 H 1.48496 * 109.47213 * 149.99893 * 8 6 4 11 11 H 1.48502 * 109.46850 * 29.99398 * 8 6 4 12 12 S 1.81401 * 109.46960 * 240.00505 * 2 1 3 13 13 C 1.81402 * 103.00160 * 75.17107 * 12 2 1 14 14 C 1.52999 * 109.46985 * 278.60404 * 13 12 2 15 15 C 1.53002 * 109.46854 * 179.97438 * 14 13 12 16 16 C 1.52994 * 109.47052 * 60.00305 * 15 14 13 17 17 C 1.53002 * 109.47376 * 299.99706 * 16 15 14 18 18 C 1.53002 * 109.46790 * 60.00133 * 17 16 15 19 19 H 1.08999 * 109.46985 * 285.48784 * 1 2 3 20 20 H 1.08999 * 109.46897 * 45.48590 * 1 2 3 21 21 H 1.09001 * 109.47205 * 165.48451 * 1 2 3 22 22 H 0.96995 * 119.99712 * 354.26220 * 7 6 4 23 23 H 1.09000 * 109.46991 * 38.60416 * 13 12 2 24 24 H 1.09000 * 109.47266 * 299.99844 * 14 13 12 25 25 H 1.09004 * 109.46767 * 60.00247 * 14 13 12 26 26 H 1.09000 * 109.47173 * 300.00043 * 15 14 13 27 27 H 1.09006 * 109.46842 * 180.02562 * 15 14 13 28 28 H 1.08999 * 109.47071 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.47345 * 59.99844 * 16 15 14 30 30 H 1.09000 * 109.46996 * 300.00352 * 17 16 15 31 31 H 1.08994 * 109.47101 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.46932 * 180.02562 * 18 17 16 33 33 H 1.08994 * 109.47311 * 59.99895 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6154 -1.6143 1.1318 6 6 1.7476 -0.2069 2.4818 7 7 1.2496 1.0041 2.6056 8 14 2.0692 -1.2443 4.0016 9 1 0.8588 -2.0435 4.3205 10 1 2.3924 -0.3568 5.1475 11 1 3.2118 -2.1575 3.7449 12 16 2.1346 -0.8550 -1.4812 13 6 1.8442 0.3571 -2.7992 14 6 0.3808 0.2896 -3.2406 15 6 0.1356 1.3124 -4.3519 16 6 1.0426 0.9982 -5.5432 17 6 2.5061 1.0656 -5.1019 18 6 2.7512 0.0429 -3.9907 19 1 -0.3633 0.2744 0.9903 20 1 -0.3633 0.7205 -0.7328 21 1 -0.3634 -0.9949 -0.2576 22 1 1.1602 1.5737 1.8257 23 1 2.0660 1.3576 -2.4280 24 1 0.1590 -0.7109 -3.6118 25 1 -0.2654 0.5139 -2.3919 26 1 0.3573 2.3128 -3.9803 27 1 -0.9071 1.2646 -4.6660 28 1 0.8677 1.7266 -6.3351 29 1 0.8210 -0.0022 -5.9148 30 1 2.7278 2.0660 -4.7303 31 1 3.1522 0.8422 -5.9508 32 1 3.7937 0.0912 -3.6759 33 1 2.5295 -0.9575 -4.3622 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034414096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:39 Heat of formation + Delta-G solvation = -43.382198 kcal Electronic energy + Delta-G solvation = -12671.554380 eV Core-core repulsion = 10628.675808 eV Total energy + Delta-G solvation = -2042.878572 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.07909 -34.43178 -30.88788 -30.60618 -29.78207 -24.99180 -22.60806 -22.39831 -21.38932 -19.57238 -17.07692 -15.78403 -14.83757 -14.37205 -14.14338 -14.05865 -13.76088 -13.31797 -12.61976 -12.32604 -11.94840 -11.85017 -11.42358 -11.17672 -11.03705 -11.00246 -10.67633 -10.62880 -10.23961 -10.14868 -9.95763 -9.67287 -8.81659 -8.67323 -8.35106 -6.71750 -6.46804 -4.18717 2.66729 3.42088 3.44394 3.60987 3.79904 4.47878 4.81749 4.85081 5.04028 5.23501 5.31893 5.36361 5.59497 5.60975 5.64643 5.75163 5.88929 6.08439 6.17177 6.18876 6.26153 6.27992 6.38287 6.49594 6.56788 6.60649 6.68550 7.08335 7.37291 7.92819 8.32970 8.70067 9.48192 10.89115 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.063067 B = 0.007331 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.863161 B = 3818.378555 C = 4019.409325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.097 3.903 3 H 0.031 0.969 4 C -0.586 4.586 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.904 5.904 8 Si 1.071 2.929 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.287 1.287 12 S -0.297 6.297 13 C -0.055 4.055 14 C -0.115 4.115 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.096 4.096 19 H 0.066 0.934 20 H 0.024 0.976 21 H 0.048 0.952 22 H 0.270 0.730 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 0.563 -12.784 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 H 0.049 0.951 4 C -0.625 4.625 5 H 0.078 0.922 6 C -0.175 4.175 7 N -0.539 5.539 8 Si 0.898 3.102 9 H -0.212 1.212 10 H -0.210 1.210 11 H -0.213 1.213 12 S -0.065 6.065 13 C -0.184 4.184 14 C -0.154 4.154 15 C -0.158 4.158 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.135 4.135 19 H 0.085 0.915 20 H 0.043 0.957 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.529 -0.510 -11.192 11.216 hybrid contribution -0.355 1.288 -1.549 2.046 sum -0.884 0.778 -12.741 12.795 Atomic orbital electron populations 1.22263 0.97391 0.99589 1.00869 1.20782 0.94388 0.96584 0.91325 0.95144 1.21590 1.38154 1.12571 0.90198 0.92186 1.25838 0.93716 0.97207 1.00758 1.70758 1.41971 1.07026 1.34144 0.83532 0.76596 0.75049 0.75031 1.21170 1.20995 1.21255 1.86548 1.84751 1.30356 1.04847 1.23032 0.97740 1.00673 0.96955 1.22030 0.95423 0.99496 0.98476 1.21596 0.99008 0.99403 0.95777 1.21533 0.95162 1.01399 0.97477 1.21553 0.96387 0.99514 0.97969 1.21372 0.99217 0.99178 0.93691 0.91480 0.95696 0.93287 0.91891 0.90675 0.91431 0.90869 0.92259 0.92172 0.92423 0.92071 0.92102 0.92026 0.91372 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.38 37.16 0.31 -3.02 16 2 C 0.10 2.48 2.35 -27.88 -0.07 2.41 16 3 H 0.03 0.83 7.43 -51.93 -0.39 0.44 16 4 C -0.59 -16.62 8.52 -34.44 -0.29 -16.91 16 5 H 0.06 1.75 7.74 -52.48 -0.41 1.35 16 6 C 0.03 0.87 4.99 -17.82 -0.09 0.78 16 7 N -0.90 -26.56 12.71 55.43 0.70 -25.85 16 8 Si 1.07 25.05 29.92 -169.99 -5.09 19.97 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 S -0.30 -6.60 20.33 -107.50 -2.19 -8.79 16 13 C -0.06 -0.96 2.61 -26.73 -0.07 -1.03 16 14 C -0.11 -1.80 5.13 -26.73 -0.14 -1.94 16 15 C -0.12 -1.50 5.92 -26.73 -0.16 -1.65 16 16 C -0.12 -1.33 5.92 -26.73 -0.16 -1.48 16 17 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 18 C -0.10 -1.40 5.21 -26.73 -0.14 -1.54 16 19 H 0.07 1.72 6.41 -51.93 -0.33 1.39 16 20 H 0.02 0.51 5.80 -51.93 -0.30 0.21 16 21 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 22 H 0.27 7.91 6.64 -40.82 -0.27 7.64 16 23 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.25 5.07 -51.93 -0.26 0.99 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 267.83 15.07 4.04 4.04 Total: -1.00 -29.02 267.83 -8.89 -37.91 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.40 Total: -1.36 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -0.96 Total: -25.91 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.70 Total: -25.85 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.97 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -2.19 Total: -8.79 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.02 -8.89 -37.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034414096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.472 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds