Wall clock time and date at job start Mon Mar 30 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47139 * 2 1 4 4 C 1.50701 * 109.47182 * 120.00504 * 2 1 3 5 5 H 1.08007 * 119.99840 * 117.19602 * 4 2 1 6 6 C 1.37869 * 120.00081 * 297.20005 * 4 2 1 7 7 N 1.31521 * 119.99858 * 347.95131 * 6 4 2 8 8 Si 1.86802 * 120.00461 * 167.95334 * 6 4 2 9 9 H 1.48500 * 109.46715 * 270.00079 * 8 6 4 10 10 H 1.48496 * 109.47213 * 149.99893 * 8 6 4 11 11 H 1.48502 * 109.46850 * 29.99398 * 8 6 4 12 12 S 1.81401 * 109.46960 * 240.00505 * 2 1 3 13 13 C 1.81402 * 103.00160 * 75.17107 * 12 2 1 14 14 C 1.52999 * 109.46985 * 278.60404 * 13 12 2 15 15 C 1.53002 * 109.46854 * 179.97438 * 14 13 12 16 16 C 1.52994 * 109.47052 * 60.00305 * 15 14 13 17 17 C 1.53002 * 109.47376 * 299.99706 * 16 15 14 18 18 C 1.53002 * 109.46790 * 60.00133 * 17 16 15 19 19 H 1.08999 * 109.46985 * 285.48784 * 1 2 3 20 20 H 1.08999 * 109.46897 * 45.48590 * 1 2 3 21 21 H 1.09001 * 109.47205 * 165.48451 * 1 2 3 22 22 H 0.96995 * 119.99712 * 354.26220 * 7 6 4 23 23 H 1.09000 * 109.46991 * 38.60416 * 13 12 2 24 24 H 1.09000 * 109.47266 * 299.99844 * 14 13 12 25 25 H 1.09004 * 109.46767 * 60.00247 * 14 13 12 26 26 H 1.09000 * 109.47173 * 300.00043 * 15 14 13 27 27 H 1.09006 * 109.46842 * 180.02562 * 15 14 13 28 28 H 1.08999 * 109.47071 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.47345 * 59.99844 * 16 15 14 30 30 H 1.09000 * 109.46996 * 300.00352 * 17 16 15 31 31 H 1.08994 * 109.47101 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.46932 * 180.02562 * 18 17 16 33 33 H 1.08994 * 109.47311 * 59.99895 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6154 -1.6143 1.1318 6 6 1.7476 -0.2069 2.4818 7 7 1.2496 1.0041 2.6056 8 14 2.0692 -1.2443 4.0016 9 1 0.8588 -2.0435 4.3205 10 1 2.3924 -0.3568 5.1475 11 1 3.2118 -2.1575 3.7449 12 16 2.1346 -0.8550 -1.4812 13 6 1.8442 0.3571 -2.7992 14 6 0.3808 0.2896 -3.2406 15 6 0.1356 1.3124 -4.3519 16 6 1.0426 0.9982 -5.5432 17 6 2.5061 1.0656 -5.1019 18 6 2.7512 0.0429 -3.9907 19 1 -0.3633 0.2744 0.9903 20 1 -0.3633 0.7205 -0.7328 21 1 -0.3634 -0.9949 -0.2576 22 1 1.1602 1.5737 1.8257 23 1 2.0660 1.3576 -2.4280 24 1 0.1590 -0.7109 -3.6118 25 1 -0.2654 0.5139 -2.3919 26 1 0.3573 2.3128 -3.9803 27 1 -0.9071 1.2646 -4.6660 28 1 0.8677 1.7266 -6.3351 29 1 0.8210 -0.0022 -5.9148 30 1 2.7278 2.0660 -4.7303 31 1 3.1522 0.8422 -5.9508 32 1 3.7937 0.0912 -3.6759 33 1 2.5295 -0.9575 -4.3622 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034414096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:39 Heat of formation + Delta-G solvation = -58.111488 kcal Electronic energy + Delta-G solvation = -12672.193090 eV Core-core repulsion = 10628.675808 eV Total energy + Delta-G solvation = -2043.517282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.21263 -36.53803 -32.46711 -31.73053 -31.42907 -27.12445 -24.02601 -23.51246 -23.16197 -20.74051 -19.11107 -17.30585 -16.55236 -15.98775 -15.68489 -15.24426 -15.17771 -14.85338 -14.16529 -13.97197 -13.46362 -13.23866 -13.05867 -12.76927 -12.67852 -12.49415 -12.14417 -12.05307 -11.95682 -11.44079 -11.19495 -11.17525 -10.70688 -10.64046 -10.37441 -8.72579 -8.52782 -6.45469 1.00268 1.51919 1.59075 1.78556 1.97002 2.51923 3.05354 3.66678 3.70499 4.03804 4.19368 4.25722 4.32092 4.38334 4.50356 4.53918 4.56188 4.59974 4.74554 4.87842 4.99486 5.09497 5.12734 5.18250 5.21403 5.28645 5.33087 5.41975 5.49994 5.79720 6.04411 6.43776 7.28923 8.63526 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.063067 B = 0.007331 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.863161 B = 3818.378555 C = 4019.409325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.093 3.907 3 H 0.004 0.996 4 C -0.605 4.605 5 H 0.045 0.955 6 C -0.013 4.013 7 N -0.921 5.921 8 Si 1.116 2.884 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.275 1.275 12 S -0.325 6.325 13 C -0.042 4.042 14 C -0.112 4.112 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.110 4.110 18 C -0.093 4.093 19 H 0.042 0.958 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.259 0.741 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 0.438 -14.444 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.035 4.035 3 H 0.022 0.978 4 C -0.643 4.643 5 H 0.063 0.937 6 C -0.213 4.213 7 N -0.556 5.556 8 Si 0.937 3.063 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.200 1.200 12 S -0.093 6.093 13 C -0.171 4.171 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.132 4.132 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.792 -0.634 -12.868 12.908 hybrid contribution -0.245 1.354 -1.142 1.788 sum -1.036 0.720 -14.010 14.067 Atomic orbital electron populations 1.22065 0.95953 1.00305 1.00116 1.20613 0.95466 0.95017 0.92452 0.97808 1.21858 1.38343 1.12250 0.91893 0.93658 1.27223 0.92792 0.97477 1.03853 1.70869 1.43405 1.07745 1.33623 0.82957 0.77447 0.74041 0.71878 1.19519 1.20467 1.20049 1.86439 1.85023 1.32310 1.05498 1.23190 1.00094 0.98046 0.95722 1.21971 0.93329 1.00791 0.99029 1.21589 1.00630 0.98019 0.95143 1.21544 0.93915 1.02552 0.97256 1.21552 0.97627 0.98318 0.97389 1.21393 0.98000 1.00456 0.93329 0.93939 0.93327 0.93045 0.93065 0.91887 0.91263 0.92731 0.92407 0.90401 0.89975 0.91474 0.92077 0.89658 0.92097 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.38 71.98 0.60 -5.37 16 2 C 0.09 4.87 2.35 29.85 0.07 4.94 16 3 H 0.00 0.22 7.43 -2.39 -0.02 0.21 16 4 C -0.60 -35.13 8.52 25.60 0.22 -34.91 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 6 C -0.01 -0.72 4.99 84.65 0.42 -0.30 16 7 N -0.92 -55.16 12.71 21.45 0.27 -54.88 16 8 Si 1.12 50.48 29.92 68.60 2.05 52.54 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 S -0.32 -14.60 20.33 -56.49 -1.15 -15.75 16 13 C -0.04 -1.43 2.61 30.60 0.08 -1.35 16 14 C -0.11 -3.34 5.13 30.59 0.16 -3.18 16 15 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 16 C -0.12 -2.14 5.92 30.59 0.18 -1.95 16 17 C -0.11 -2.24 5.92 30.60 0.18 -2.06 16 18 C -0.09 -2.56 5.21 30.60 0.16 -2.40 16 19 H 0.04 2.22 6.41 -2.39 -0.02 2.20 16 20 H 0.05 2.04 5.80 -2.39 -0.01 2.03 16 21 H 0.05 2.38 8.06 -2.39 -0.02 2.36 16 22 H 0.26 15.70 6.64 -92.71 -0.62 15.09 16 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.05 1.82 5.07 -2.39 -0.01 1.81 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -63.23 267.83 4.64 -58.58 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.21 Total: 8.49 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 2.25 Total: -48.98 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.27 Total: -54.88 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.54 kcal Atomic # 16 Polarization: -14.60 SS G_CDS: -1.15 Total: -15.75 kcal Total: -63.23 4.64 -58.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034414096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.473 kcal (2) G-P(sol) polarization free energy of solvation -63.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds