Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47246 * 2 1 4 4 C 1.50700 * 109.46865 * 240.00339 * 2 1 3 5 5 H 1.07996 * 119.99905 * 239.99797 * 4 2 1 6 6 C 1.37885 * 120.00167 * 60.00067 * 4 2 1 7 7 N 1.31511 * 119.99669 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47050 * 89.99466 * 8 6 4 10 10 H 1.48497 * 109.47030 * 209.99806 * 8 6 4 11 11 H 1.48504 * 109.47259 * 329.99757 * 8 6 4 12 12 S 1.81391 * 109.47625 * 120.00029 * 2 1 3 13 13 C 1.81398 * 103.00167 * 292.63316 * 12 2 1 14 14 C 1.53005 * 109.47330 * 172.93763 * 13 12 2 15 15 C 1.52994 * 109.47189 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47390 * 299.99962 * 15 14 13 17 17 C 1.53005 * 109.46923 * 59.99875 * 16 15 14 18 18 C 1.52997 * 109.46762 * 292.93574 * 13 12 2 19 19 H 1.08998 * 109.47134 * 64.45029 * 1 2 3 20 20 H 1.09003 * 109.46780 * 184.45775 * 1 2 3 21 21 H 1.08999 * 109.46665 * 304.45353 * 1 2 3 22 22 H 0.96998 * 120.00026 * 180.02562 * 7 6 4 23 23 H 1.08992 * 109.47394 * 52.93655 * 13 12 2 24 24 H 1.09002 * 109.46813 * 59.99699 * 14 13 12 25 25 H 1.09003 * 109.47116 * 300.00212 * 14 13 12 26 26 H 1.09003 * 109.47038 * 180.02562 * 15 14 13 27 27 H 1.09002 * 109.47186 * 60.00298 * 15 14 13 28 28 H 1.08998 * 109.47318 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.47230 * 300.00309 * 16 15 14 30 30 H 1.09002 * 109.46813 * 60.00179 * 17 16 15 31 31 H 1.08995 * 109.47285 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47572 * 60.00214 * 18 13 12 33 33 H 1.09002 * 109.47365 * 300.00291 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4119 10 1 2.4863 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7125 12 16 2.1348 -0.8551 1.4810 13 6 1.6296 0.2520 2.8263 14 6 1.9152 -0.4175 4.1722 15 6 1.4897 0.5165 5.3068 16 6 2.2756 1.8258 5.2116 17 6 1.9900 2.4952 3.8657 18 6 2.4151 1.5615 2.7312 19 1 -0.3633 0.4432 -0.9271 20 1 -0.3633 -1.0246 0.0799 21 1 -0.3632 0.5814 0.8474 22 1 0.7081 1.1610 -3.4843 23 1 0.5632 0.4612 2.7436 24 1 2.9817 -0.6267 4.2548 25 1 1.3556 -1.3505 4.2399 26 1 1.6935 0.0397 6.2656 27 1 0.4232 0.7260 5.2243 28 1 1.9721 2.4914 6.0196 29 1 3.3421 1.6163 5.2941 30 1 0.9235 2.7048 3.7832 31 1 2.5502 3.4277 3.7976 32 1 2.2117 2.0385 1.7725 33 1 3.4817 1.3523 2.8139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034414098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = -41.633762 kcal Electronic energy + Delta-G solvation = -12643.607900 eV Core-core repulsion = 10600.805146 eV Total energy + Delta-G solvation = -2042.802754 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.99648 -33.98922 -30.78711 -30.54138 -29.98682 -25.27776 -22.49572 -22.32566 -21.06759 -19.56326 -16.58206 -15.61400 -14.97293 -14.53524 -14.13832 -13.96824 -13.53739 -12.99525 -12.49093 -12.26095 -11.99932 -11.68787 -11.41056 -11.01429 -10.92805 -10.90181 -10.73868 -10.50173 -10.27150 -10.19033 -9.97756 -9.42030 -9.24771 -8.63322 -8.33650 -6.59821 -6.11629 -4.19391 2.80065 3.27517 3.33463 3.39149 3.96070 4.38124 4.89320 4.93081 5.10921 5.19643 5.40417 5.44648 5.67256 5.69508 5.73076 5.82045 5.97409 6.15732 6.24928 6.26756 6.35825 6.42301 6.56154 6.63094 6.73251 6.87504 6.94363 7.45153 7.70306 7.89799 8.16484 8.80543 9.43664 10.94055 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.059274 B = 0.007369 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.267852 B = 3798.583830 C = 3942.647488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.116 3.884 3 H 0.043 0.957 4 C -0.502 4.502 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.890 5.890 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 S -0.320 6.320 13 C -0.051 4.051 14 C -0.096 4.096 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.111 4.111 19 H 0.093 0.907 20 H 0.037 0.963 21 H 0.009 0.991 22 H 0.264 0.736 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 2.056 11.827 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.012 4.012 3 H 0.061 0.939 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 S -0.089 6.089 13 C -0.180 4.180 14 C -0.134 4.134 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.151 4.151 19 H 0.111 0.889 20 H 0.056 0.944 21 H 0.028 0.972 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.001 1.164 11.734 11.834 hybrid contribution -0.433 0.753 -0.997 1.322 sum 0.569 1.917 10.737 10.921 Atomic orbital electron populations 1.22051 0.97120 0.99523 1.01113 1.20730 0.94782 0.96649 0.89002 0.93944 1.20732 1.31737 1.12850 0.88863 0.91698 1.24910 0.94898 0.95014 0.98839 1.69870 1.36405 1.22785 1.23832 0.86391 0.79406 0.79267 0.81836 1.20454 1.21058 1.19658 1.86535 1.79542 1.38190 1.04607 1.22948 1.01853 0.97023 0.96127 1.21334 1.01901 0.98017 0.92178 1.21544 1.00052 0.95818 0.97945 1.21539 1.00312 0.96567 0.97156 1.21567 1.01218 0.98159 0.94696 1.21822 1.00225 0.94461 0.98565 0.88878 0.94393 0.97190 0.92650 0.90540 0.91538 0.91557 0.92114 0.92116 0.92473 0.92056 0.92234 0.92170 0.91448 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.90 37.16 0.33 -3.07 16 2 C 0.12 2.98 2.59 -27.88 -0.07 2.91 16 3 H 0.04 1.16 6.94 -51.92 -0.36 0.80 16 4 C -0.50 -14.11 8.58 -34.44 -0.30 -14.40 16 5 H 0.06 1.85 7.71 -52.49 -0.40 1.45 16 6 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 7 N -0.89 -25.11 11.29 55.43 0.63 -24.49 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 S -0.32 -7.16 20.45 -107.50 -2.20 -9.36 16 13 C -0.05 -0.90 2.50 -26.73 -0.07 -0.96 16 14 C -0.10 -1.41 5.21 -26.73 -0.14 -1.55 16 15 C -0.11 -1.37 5.92 -26.73 -0.16 -1.52 16 16 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 17 C -0.12 -1.54 5.92 -26.75 -0.16 -1.70 16 18 C -0.11 -1.84 5.12 -26.75 -0.14 -1.98 16 19 H 0.09 2.48 5.96 -51.93 -0.31 2.17 16 20 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.01 0.21 7.06 -51.93 -0.37 -0.16 16 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.08 1.40 7.08 -51.93 -0.37 1.03 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.26 6.86 -51.93 -0.36 0.90 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 269.92 15.07 4.07 4.07 Total: -1.00 -28.01 269.92 -9.00 -37.01 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.53 Total: -1.51 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -0.95 Total: -22.06 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.63 Total: -24.49 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -2.20 Total: -9.36 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.01 -9.00 -37.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034414098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.624 kcal (2) G-P(sol) polarization free energy of solvation -28.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds