Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47246 * 2 1 4 4 C 1.50700 * 109.46865 * 240.00339 * 2 1 3 5 5 H 1.07996 * 119.99905 * 239.99797 * 4 2 1 6 6 C 1.37885 * 120.00167 * 60.00067 * 4 2 1 7 7 N 1.31511 * 119.99669 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47050 * 89.99466 * 8 6 4 10 10 H 1.48497 * 109.47030 * 209.99806 * 8 6 4 11 11 H 1.48504 * 109.47259 * 329.99757 * 8 6 4 12 12 S 1.81391 * 109.47625 * 120.00029 * 2 1 3 13 13 C 1.81398 * 103.00167 * 292.63316 * 12 2 1 14 14 C 1.53005 * 109.47330 * 172.93763 * 13 12 2 15 15 C 1.52994 * 109.47189 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47390 * 299.99962 * 15 14 13 17 17 C 1.53005 * 109.46923 * 59.99875 * 16 15 14 18 18 C 1.52997 * 109.46762 * 292.93574 * 13 12 2 19 19 H 1.08998 * 109.47134 * 64.45029 * 1 2 3 20 20 H 1.09003 * 109.46780 * 184.45775 * 1 2 3 21 21 H 1.08999 * 109.46665 * 304.45353 * 1 2 3 22 22 H 0.96998 * 120.00026 * 180.02562 * 7 6 4 23 23 H 1.08992 * 109.47394 * 52.93655 * 13 12 2 24 24 H 1.09002 * 109.46813 * 59.99699 * 14 13 12 25 25 H 1.09003 * 109.47116 * 300.00212 * 14 13 12 26 26 H 1.09003 * 109.47038 * 180.02562 * 15 14 13 27 27 H 1.09002 * 109.47186 * 60.00298 * 15 14 13 28 28 H 1.08998 * 109.47318 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.47230 * 300.00309 * 16 15 14 30 30 H 1.09002 * 109.46813 * 60.00179 * 17 16 15 31 31 H 1.08995 * 109.47285 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47572 * 60.00214 * 18 13 12 33 33 H 1.09002 * 109.47365 * 300.00291 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1614 -4.4119 10 1 2.4863 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7125 12 16 2.1348 -0.8551 1.4810 13 6 1.6296 0.2520 2.8263 14 6 1.9152 -0.4175 4.1722 15 6 1.4897 0.5165 5.3068 16 6 2.2756 1.8258 5.2116 17 6 1.9900 2.4952 3.8657 18 6 2.4151 1.5615 2.7312 19 1 -0.3633 0.4432 -0.9271 20 1 -0.3633 -1.0246 0.0799 21 1 -0.3632 0.5814 0.8474 22 1 0.7081 1.1610 -3.4843 23 1 0.5632 0.4612 2.7436 24 1 2.9817 -0.6267 4.2548 25 1 1.3556 -1.3505 4.2399 26 1 1.6935 0.0397 6.2656 27 1 0.4232 0.7260 5.2243 28 1 1.9721 2.4914 6.0196 29 1 3.3421 1.6163 5.2941 30 1 0.9235 2.7048 3.7832 31 1 2.5502 3.4277 3.7976 32 1 2.2117 2.0385 1.7725 33 1 3.4817 1.3523 2.8139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034414098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = -55.357795 kcal Electronic energy + Delta-G solvation = -12644.203019 eV Core-core repulsion = 10600.805146 eV Total energy + Delta-G solvation = -2043.397873 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.16036 -36.07539 -32.52263 -31.69094 -31.52543 -27.39400 -23.82774 -23.51313 -22.94113 -20.71932 -18.58225 -17.36515 -16.66674 -16.04136 -15.53186 -15.17109 -14.97901 -14.79352 -14.02130 -13.81020 -13.42918 -13.14561 -13.05479 -12.88886 -12.58552 -12.42335 -12.20813 -12.06030 -12.04346 -11.41797 -11.31870 -11.16366 -10.89584 -10.61402 -10.25989 -8.42981 -8.22438 -6.39123 1.13528 1.40198 1.40468 1.52695 2.11628 2.38594 3.05328 3.72488 3.76080 4.08308 4.24935 4.30658 4.42472 4.54842 4.58588 4.61045 4.70147 4.84534 4.88486 4.93219 5.11053 5.15433 5.22352 5.25404 5.31824 5.34770 5.38657 5.54189 5.59404 5.77687 6.07738 6.63762 7.27674 8.82300 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.059274 B = 0.007369 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.267852 B = 3798.583830 C = 3942.647488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.114 3.886 3 H 0.015 0.985 4 C -0.530 4.530 5 H 0.052 0.948 6 C 0.023 3.977 7 N -0.913 5.913 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.271 1.271 12 S -0.346 6.346 13 C -0.038 4.038 14 C -0.092 4.092 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.109 4.109 19 H 0.071 0.929 20 H 0.035 0.965 21 H 0.028 0.972 22 H 0.268 0.732 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 2.175 13.318 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.013 4.013 3 H 0.033 0.967 4 C -0.568 4.568 5 H 0.071 0.929 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.792 3.208 9 H -0.196 1.196 10 H -0.201 1.201 11 H -0.196 1.196 12 S -0.114 6.114 13 C -0.166 4.166 14 C -0.131 4.131 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.152 4.152 18 C -0.148 4.148 19 H 0.089 0.911 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.054 1.284 13.229 13.333 hybrid contribution -0.445 0.746 -1.391 1.640 sum 0.610 2.030 11.838 12.027 Atomic orbital electron populations 1.21863 0.96431 0.99354 1.00757 1.20490 0.95262 0.95218 0.90367 0.96709 1.20976 1.32381 1.12987 0.90494 0.92949 1.25713 0.94839 0.95636 1.01621 1.69972 1.36790 1.23637 1.24716 0.85407 0.78844 0.78363 0.78204 1.19631 1.20064 1.19577 1.86427 1.79904 1.39807 1.05306 1.23109 1.01449 0.96668 0.95401 1.21357 1.01964 0.98572 0.91189 1.21544 1.00300 0.95398 0.97525 1.21548 1.00579 0.96587 0.96531 1.21555 1.01427 0.97925 0.94254 1.21764 0.99901 0.94460 0.98714 0.91058 0.94628 0.95284 0.92296 0.91067 0.91635 0.91631 0.89572 0.91699 0.89856 0.91700 0.92080 0.90854 0.94544 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.23 8.90 71.98 0.64 -5.59 16 2 C 0.11 6.07 2.59 29.85 0.08 6.15 16 3 H 0.01 0.86 6.94 -2.39 -0.02 0.84 16 4 C -0.53 -30.51 8.58 25.60 0.22 -30.29 16 5 H 0.05 3.08 7.71 -2.91 -0.02 3.05 16 6 C 0.02 1.28 5.29 84.66 0.45 1.72 16 7 N -0.91 -52.27 11.29 21.45 0.24 -52.03 16 8 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 S -0.35 -15.73 20.45 -56.49 -1.16 -16.88 16 13 C -0.04 -1.31 2.50 30.59 0.08 -1.24 16 14 C -0.09 -2.52 5.21 30.59 0.16 -2.36 16 15 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 16 C -0.12 -2.23 5.92 30.60 0.18 -2.05 16 17 C -0.11 -2.71 5.92 30.58 0.18 -2.53 16 18 C -0.11 -3.57 5.12 30.58 0.16 -3.41 16 19 H 0.07 3.89 5.96 -2.39 -0.01 3.88 16 20 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.03 1.28 7.06 -2.39 -0.02 1.27 16 22 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 23 H 0.07 2.56 7.08 -2.39 -0.02 2.54 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -60.87 269.92 4.49 -56.38 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.05 Total: 8.07 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 2.32 Total: -41.61 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.24 Total: -52.03 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -15.73 SS G_CDS: -1.16 Total: -16.88 kcal Total: -60.87 4.49 -56.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034414098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.019 kcal (2) G-P(sol) polarization free energy of solvation -60.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds