Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99705 * 2 1 4 4 H 1.09000 * 110.27541 * 329.36284 * 3 2 1 5 5 C 1.53998 * 110.30800 * 91.45813 * 3 2 1 6 6 N 1.47896 * 107.05742 * 117.68696 * 5 3 2 7 7 C 1.48534 * 105.81950 * 25.33256 * 6 5 3 8 8 H 1.09000 * 110.66960 * 79.22759 * 7 6 5 9 9 C 1.50703 * 110.66263 * 202.18528 * 7 6 5 10 10 O 1.21294 * 120.00213 * 18.55298 * 9 7 6 11 11 N 1.34773 * 119.99998 * 198.54205 * 9 7 6 12 12 C 1.37098 * 120.00088 * 180.02562 * 11 9 7 13 13 H 1.07995 * 120.00367 * 0.02562 * 12 11 9 14 14 C 1.38953 * 120.00025 * 180.02562 * 12 11 9 15 15 N 1.31407 * 120.00003 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99874 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46837 * 90.00874 * 16 14 12 18 18 H 1.48502 * 109.47164 * 210.00309 * 16 14 12 19 19 H 1.48498 * 109.47315 * 330.00665 * 16 14 12 20 20 C 1.54598 * 110.30489 * 207.17126 * 3 2 1 21 21 H 1.09000 * 109.46789 * 299.99642 * 1 2 3 22 22 H 1.09001 * 109.47495 * 59.99834 * 1 2 3 23 23 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.91484 * 237.04421 * 5 3 2 25 25 H 1.09003 * 109.91286 * 358.13789 * 5 3 2 26 26 H 1.00902 * 110.99740 * 145.84550 * 6 5 3 27 27 H 0.97002 * 119.99974 * 0.02562 * 11 9 7 28 28 H 0.97006 * 120.00057 * 179.97438 * 15 14 12 29 29 H 1.09002 * 110.72612 * 337.48204 * 20 3 2 30 30 H 1.09003 * 110.72462 * 100.77362 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3601 2.0084 -0.5210 5 6 2.2611 1.7789 1.4438 6 7 3.7205 1.9684 1.5907 7 6 4.2337 2.2372 0.2230 8 1 4.0481 3.2731 -0.0609 9 6 5.7040 1.9186 0.1345 10 8 6.2211 1.2047 0.9677 11 7 6.4443 2.4266 -0.8706 12 6 7.7817 2.1364 -0.9514 13 1 8.2420 1.5002 -0.2099 14 6 8.5451 2.6606 -1.9874 15 7 9.8269 2.3820 -2.0651 16 14 7.7488 3.7604 -3.2703 17 1 7.8287 5.1756 -2.8274 18 1 8.4600 3.6060 -4.5648 19 1 6.3249 3.3739 -3.4386 20 6 3.4068 1.2711 -0.6621 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7444 2.7223 1.6203 25 1 1.9088 1.0252 2.1481 26 1 3.9246 2.7376 2.2111 27 1 6.0308 2.9977 -1.5368 28 1 10.3598 2.7477 -2.7885 29 1 3.8246 0.2648 -0.6292 30 1 3.3564 1.6357 -1.6881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040860094.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -68.643503 kcal Electronic energy + Delta-G solvation = -14425.687530 eV Core-core repulsion = 11835.420331 eV Total energy + Delta-G solvation = -2590.267199 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.46815 -37.92673 -35.94555 -33.87079 -31.63862 -29.86178 -28.83953 -26.39997 -24.96051 -21.98056 -20.87095 -19.23106 -18.26800 -17.15313 -16.43077 -15.80413 -15.05480 -14.86027 -14.72040 -13.53464 -13.49505 -13.33903 -12.92835 -12.49192 -12.27385 -11.90400 -11.74183 -11.72434 -11.38623 -11.08650 -10.80162 -10.56779 -9.94493 -9.70069 -9.52945 -8.61311 -8.14260 -8.09243 -6.27897 -3.78927 3.03810 3.07688 3.16238 3.55403 3.83316 4.11718 4.16450 4.63562 4.81168 4.83239 5.12856 5.19410 5.22393 5.23261 5.33510 5.47920 5.49954 5.62387 5.88383 5.91673 5.98163 6.30304 6.83915 7.18215 7.47244 7.62241 8.18449 8.64816 8.99410 9.46241 9.89061 10.85413 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.047362 B = 0.007339 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.048871 B = 3814.107910 C = 4088.907633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.080 3.920 4 H 0.068 0.932 5 C 0.020 3.980 6 N -0.637 5.637 7 C 0.058 3.942 8 H 0.059 0.941 9 C 0.462 3.538 10 O -0.551 6.551 11 N -0.592 5.592 12 C -0.303 4.303 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.882 5.882 16 Si 0.878 3.122 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C -0.108 4.108 21 H 0.040 0.960 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.341 0.659 27 H 0.369 0.631 28 H 0.273 0.727 29 H 0.096 0.904 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.438 2.650 0.353 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.021 3.979 4 H 0.086 0.914 5 C -0.109 4.109 6 N -0.268 5.268 7 C -0.055 4.055 8 H 0.077 0.923 9 C 0.246 3.754 10 O -0.431 6.431 11 N -0.232 5.232 12 C -0.432 4.432 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.522 5.522 16 Si 0.705 3.295 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.147 4.147 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.103 0.897 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.157 0.843 27 H 0.202 0.798 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.568 1.300 0.864 17.637 hybrid contribution -1.046 2.137 -1.289 2.706 sum -18.614 3.437 -0.425 18.933 Atomic orbital electron populations 1.22789 0.81594 1.02698 0.99696 1.88038 1.19146 1.27217 1.94814 1.23039 0.95040 0.84728 0.95092 0.91442 1.23210 0.89932 1.00099 0.97702 1.62613 1.08890 1.47082 1.08170 1.22450 0.95251 0.97596 0.90229 0.92331 1.19364 0.86571 0.85206 0.84210 1.90577 1.72345 1.39160 1.41034 1.42228 1.09828 1.46034 1.25079 1.19443 0.81719 1.29690 1.12345 0.86252 1.25023 0.95419 0.98013 0.97686 1.69621 1.05449 1.44393 1.32782 0.86691 0.79328 0.81382 0.82111 1.19688 1.20170 1.19498 1.22525 0.92333 1.02026 0.97767 0.94171 0.94213 0.89675 0.94113 0.89508 0.84262 0.79831 0.91653 0.88578 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.86 101.05 1.10 1.37 16 2 O -0.37 -5.18 10.29 -35.23 -0.36 -5.55 16 3 C 0.08 1.04 3.45 -25.37 -0.09 0.95 16 4 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 5 C 0.02 0.27 7.33 -2.75 -0.02 0.25 16 6 N -0.64 -10.62 6.79 -104.38 -0.71 -11.33 16 7 C 0.06 1.02 3.61 -66.94 -0.24 0.78 16 8 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 9 C 0.46 10.90 7.10 -10.99 -0.08 10.82 16 10 O -0.55 -15.60 16.18 5.55 0.09 -15.51 16 11 N -0.59 -14.37 5.09 -10.96 -0.06 -14.42 16 12 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 13 H 0.12 3.92 7.39 -52.49 -0.39 3.54 16 14 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 15 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 16 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 20 C -0.11 -1.71 6.23 -24.87 -0.16 -1.86 16 21 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.04 0.32 8.10 -51.93 -0.42 -0.11 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 1.16 7.96 -51.93 -0.41 0.74 16 26 H 0.34 5.08 8.92 -39.29 -0.35 4.73 16 27 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.10 1.79 7.99 -51.93 -0.42 1.38 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 258.02 15.07 3.89 3.89 Total: -1.00 -33.92 258.02 -4.73 -38.65 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.91 Total: 10.26 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 0.27 Total: 4.49 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.01 Total: -50.99 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.27 Total: -21.06 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.92 -4.73 -38.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860094.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.989 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds