Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99705 * 2 1 4 4 H 1.09000 * 110.27541 * 329.36284 * 3 2 1 5 5 C 1.53998 * 110.30800 * 91.45813 * 3 2 1 6 6 N 1.47896 * 107.05742 * 117.68696 * 5 3 2 7 7 C 1.48534 * 105.81950 * 25.33256 * 6 5 3 8 8 H 1.09000 * 110.66960 * 79.22759 * 7 6 5 9 9 C 1.50703 * 110.66263 * 202.18528 * 7 6 5 10 10 O 1.21294 * 120.00213 * 18.55298 * 9 7 6 11 11 N 1.34773 * 119.99998 * 198.54205 * 9 7 6 12 12 C 1.37098 * 120.00088 * 180.02562 * 11 9 7 13 13 H 1.07995 * 120.00367 * 0.02562 * 12 11 9 14 14 C 1.38953 * 120.00025 * 180.02562 * 12 11 9 15 15 N 1.31407 * 120.00003 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99874 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46837 * 90.00874 * 16 14 12 18 18 H 1.48502 * 109.47164 * 210.00309 * 16 14 12 19 19 H 1.48498 * 109.47315 * 330.00665 * 16 14 12 20 20 C 1.54598 * 110.30489 * 207.17126 * 3 2 1 21 21 H 1.09000 * 109.46789 * 299.99642 * 1 2 3 22 22 H 1.09001 * 109.47495 * 59.99834 * 1 2 3 23 23 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.91484 * 237.04421 * 5 3 2 25 25 H 1.09003 * 109.91286 * 358.13789 * 5 3 2 26 26 H 1.00902 * 110.99740 * 145.84550 * 6 5 3 27 27 H 0.97002 * 119.99974 * 0.02562 * 11 9 7 28 28 H 0.97006 * 120.00057 * 179.97438 * 15 14 12 29 29 H 1.09002 * 110.72612 * 337.48204 * 20 3 2 30 30 H 1.09003 * 110.72462 * 100.77362 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3601 2.0084 -0.5210 5 6 2.2611 1.7789 1.4438 6 7 3.7205 1.9684 1.5907 7 6 4.2337 2.2372 0.2230 8 1 4.0481 3.2731 -0.0609 9 6 5.7040 1.9186 0.1345 10 8 6.2211 1.2047 0.9677 11 7 6.4443 2.4266 -0.8706 12 6 7.7817 2.1364 -0.9514 13 1 8.2420 1.5002 -0.2099 14 6 8.5451 2.6606 -1.9874 15 7 9.8269 2.3820 -2.0651 16 14 7.7488 3.7604 -3.2703 17 1 7.8287 5.1756 -2.8274 18 1 8.4600 3.6060 -4.5648 19 1 6.3249 3.3739 -3.4386 20 6 3.4068 1.2711 -0.6621 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7444 2.7223 1.6203 25 1 1.9088 1.0252 2.1481 26 1 3.9246 2.7376 2.2111 27 1 6.0308 2.9977 -1.5368 28 1 10.3598 2.7477 -2.7885 29 1 3.8246 0.2648 -0.6292 30 1 3.3564 1.6357 -1.6881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040860094.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -98.462608 kcal Electronic energy + Delta-G solvation = -14426.980583 eV Core-core repulsion = 11835.420331 eV Total energy + Delta-G solvation = -2591.560252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.86805 -39.40630 -37.15943 -35.94699 -33.75613 -31.05300 -30.08054 -27.18997 -26.88313 -23.50529 -21.88540 -21.17356 -20.11599 -18.31551 -17.81992 -17.31188 -16.61451 -16.00712 -15.80964 -15.24585 -15.11906 -14.81594 -14.58523 -14.09729 -13.60057 -13.22669 -13.03877 -12.73588 -12.67470 -12.47285 -12.41656 -11.98372 -11.81250 -11.50882 -10.59243 -10.40146 -10.25031 -9.40015 -8.41198 -6.02641 1.30176 1.35798 1.45313 1.89446 2.23613 2.65116 2.85036 3.14396 3.44542 3.64267 3.69880 4.05315 4.15322 4.29290 4.38032 4.50871 4.60159 4.62845 4.80756 4.89897 4.93132 5.04738 5.50319 5.72535 5.95710 6.31008 6.38609 6.60522 6.88017 7.39486 7.97583 8.76690 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.047362 B = 0.007339 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.048871 B = 3814.107910 C = 4088.907633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.408 6.408 3 C 0.085 3.915 4 H 0.108 0.892 5 C 0.023 3.977 6 N -0.671 5.671 7 C 0.069 3.931 8 H 0.103 0.897 9 C 0.458 3.542 10 O -0.611 6.611 11 N -0.587 5.587 12 C -0.331 4.331 13 H 0.052 0.948 14 C -0.014 4.014 15 N -0.934 5.934 16 Si 0.965 3.035 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.229 1.229 20 C -0.111 4.111 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.348 0.652 27 H 0.390 0.610 28 H 0.280 0.720 29 H 0.054 0.946 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.024 4.998 -1.411 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C 0.027 3.973 4 H 0.126 0.874 5 C -0.106 4.106 6 N -0.303 5.303 7 C -0.044 4.044 8 H 0.121 0.879 9 C 0.245 3.755 10 O -0.494 6.494 11 N -0.229 5.229 12 C -0.460 4.460 13 H 0.070 0.930 14 C -0.213 4.213 15 N -0.575 5.575 16 Si 0.784 3.216 17 H -0.179 1.179 18 H -0.199 1.199 19 H -0.152 1.152 20 C -0.150 4.150 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.165 0.835 27 H 0.225 0.775 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.196 3.650 -0.891 21.527 hybrid contribution 0.116 1.287 -0.624 1.435 sum -21.080 4.937 -1.514 21.704 Atomic orbital electron populations 1.23016 0.79276 1.03794 1.01262 1.88000 1.21761 1.27947 1.94985 1.23070 0.93959 0.85395 0.94881 0.87398 1.23279 0.87681 1.01806 0.97819 1.62469 1.11704 1.48098 1.08030 1.22334 0.90198 1.00274 0.91614 0.87930 1.20687 0.89234 0.83141 0.82464 1.90544 1.74393 1.41456 1.43054 1.42017 1.08189 1.46600 1.26082 1.19009 0.84246 1.30537 1.12225 0.92958 1.26143 0.95767 0.99334 1.00055 1.69809 1.07750 1.45826 1.34113 0.85371 0.80112 0.78764 0.77331 1.17885 1.19915 1.15232 1.22559 0.93804 0.99307 0.99330 0.92738 0.92367 0.89042 0.90209 0.90328 0.83493 0.77458 0.91080 0.92729 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.86 113.37 1.23 1.57 16 2 O -0.41 -10.32 10.29 -148.98 -1.53 -11.86 16 3 C 0.09 1.91 3.45 31.48 0.11 2.02 16 4 H 0.11 1.59 7.84 -2.39 -0.02 1.57 16 5 C 0.02 0.53 7.33 86.45 0.63 1.16 16 6 N -0.67 -21.31 6.79 -484.14 -3.29 -24.60 16 7 C 0.07 2.26 3.61 44.52 0.16 2.42 16 8 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 9 C 0.46 21.88 7.10 87.66 0.62 22.50 16 10 O -0.61 -36.51 16.18 -3.07 -0.05 -36.56 16 11 N -0.59 -28.47 5.09 -306.98 -1.56 -30.04 16 12 C -0.33 -19.86 10.16 84.04 0.85 -19.01 16 13 H 0.05 3.76 7.39 -2.91 -0.02 3.73 16 14 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 15 N -0.93 -57.01 13.96 21.66 0.30 -56.71 16 16 Si 0.96 38.70 27.74 68.60 1.90 40.60 16 17 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 19 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 20 C -0.11 -3.26 6.23 31.80 0.20 -3.06 16 21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 23 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.92 7.96 -2.39 -0.02 1.90 16 26 H 0.35 9.81 8.92 -89.69 -0.80 9.01 16 27 H 0.39 15.42 5.76 -92.71 -0.53 14.89 16 28 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 29 H 0.05 2.04 7.99 -2.39 -0.02 2.02 16 30 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -81.17 258.02 -0.19 -81.36 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.24 Total: 30.54 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.28 Total: 7.27 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -4.55 Total: -111.34 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -1.58 Total: -48.42 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.60 kcal Total: -81.17 -0.19 -81.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860094.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.106 kcal (2) G-P(sol) polarization free energy of solvation -81.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds