Wall clock time and date at job start Mon Mar 30 2020 02:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00211 * 2 1 4 4 H 1.09001 * 110.28880 * 30.67689 * 3 2 1 5 5 C 1.54388 * 110.32624 * 268.54754 * 3 2 1 6 6 N 1.48558 * 104.59594 * 217.14983 * 5 3 2 7 7 C 1.48568 * 104.22068 * 39.48270 * 6 5 3 8 8 H 1.08998 * 110.41219 * 79.29956 * 7 6 5 9 9 C 1.50704 * 110.40751 * 201.73958 * 7 6 5 10 10 O 1.21288 * 120.00394 * 18.54129 * 9 7 6 11 11 N 1.34775 * 119.99486 * 198.55029 * 9 7 6 12 12 C 1.37097 * 119.99926 * 180.02562 * 11 9 7 13 13 H 1.08003 * 120.00228 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00168 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47452 * 60.00350 * 16 14 12 18 18 H 1.48507 * 109.47031 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47383 * 299.99891 * 16 14 12 20 20 C 1.54268 * 110.41114 * 152.86257 * 3 2 1 21 21 H 1.08997 * 109.46738 * 299.99988 * 1 2 3 22 22 H 1.09002 * 109.47436 * 59.99689 * 1 2 3 23 23 H 1.08997 * 109.47497 * 180.02562 * 1 2 3 24 24 H 1.08999 * 110.40932 * 98.37113 * 5 3 2 25 25 H 1.09004 * 110.40796 * 335.92661 * 5 3 2 26 26 H 1.00901 * 110.99875 * 159.03649 * 6 5 3 27 27 H 0.96995 * 120.00297 * 359.97438 * 11 9 7 28 28 H 0.96998 * 119.99912 * 179.97438 * 15 14 12 29 29 H 1.09003 * 110.32138 * 237.83893 * 20 3 2 30 30 H 1.08998 * 110.31955 * 359.93915 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3607 2.0083 0.5216 5 6 2.2619 1.7804 -1.4473 6 7 3.5436 2.5282 -1.3783 7 6 4.3811 1.7318 -0.4447 8 1 4.8070 0.8694 -0.9575 9 6 5.4735 2.5881 0.1422 10 8 5.3811 3.7970 0.1076 11 7 6.5532 2.0106 0.7053 12 6 7.5468 2.7896 1.2397 13 1 7.4645 3.8660 1.2091 14 6 8.6597 2.1942 1.8208 15 7 8.7602 0.8845 1.8576 16 14 10.0138 3.2556 2.5482 17 1 9.4519 4.1006 3.6325 18 1 11.0819 2.3848 3.1017 19 1 10.5845 4.1252 1.4884 20 6 3.4045 1.2735 0.6595 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.4564 2.4362 -1.7776 25 1 2.3561 0.9255 -2.1169 26 1 3.9755 2.5903 -2.2881 27 1 6.6270 1.0439 0.7332 28 1 9.5373 0.4689 2.2629 29 1 3.4392 1.9608 1.5048 30 1 3.6462 0.2617 0.9848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040860096.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:16 Heat of formation + Delta-G solvation = -76.622995 kcal Electronic energy + Delta-G solvation = -14373.298078 eV Core-core repulsion = 11782.684862 eV Total energy + Delta-G solvation = -2590.613216 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.34768 -37.77588 -35.81603 -33.80850 -31.21176 -29.72672 -28.65722 -26.32755 -24.94197 -22.06456 -20.77697 -18.97230 -17.84611 -17.13402 -16.29894 -15.68243 -14.98451 -14.54776 -14.48635 -13.97735 -13.40276 -13.21794 -12.91241 -12.33172 -12.08740 -11.74695 -11.47953 -11.45932 -11.24615 -10.98624 -10.48266 -10.41071 -10.17685 -9.62707 -9.45385 -8.58470 -8.00649 -7.92042 -6.37814 -3.78597 3.22413 3.28229 3.32803 3.63449 3.96165 4.15927 4.49798 4.77903 4.86620 5.12101 5.23823 5.27414 5.31170 5.38630 5.51946 5.57262 5.69785 5.81333 5.95638 6.07063 6.30276 6.38489 6.85689 7.25738 7.52454 7.58492 8.10366 8.66771 9.22228 9.59346 10.12031 10.79910 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058719 B = 0.006556 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.731824 B = 4270.059751 C = 4543.284050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.073 0.927 5 C 0.015 3.985 6 N -0.633 5.633 7 C 0.059 3.941 8 H 0.060 0.940 9 C 0.451 3.549 10 O -0.574 6.574 11 N -0.564 5.564 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.107 4.107 21 H 0.041 0.959 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.340 0.660 27 H 0.392 0.608 28 H 0.272 0.728 29 H 0.085 0.915 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 -3.711 -3.815 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.026 3.974 4 H 0.091 0.909 5 C -0.115 4.115 6 N -0.263 5.263 7 C -0.055 4.055 8 H 0.078 0.922 9 C 0.235 3.765 10 O -0.456 6.456 11 N -0.200 5.200 12 C -0.429 4.429 13 H 0.120 0.880 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.146 4.146 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.156 0.844 27 H 0.225 0.775 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.169 -2.633 -3.284 12.877 hybrid contribution 0.783 -0.772 -0.211 1.120 sum -11.386 -3.405 -3.495 12.388 Atomic orbital electron populations 1.22762 0.81445 1.02468 0.99931 1.87951 1.19423 1.27914 1.94922 1.22902 0.95317 0.83908 0.95277 0.90869 1.23408 0.94283 0.96882 0.96944 1.63356 1.02945 1.46377 1.13616 1.22319 0.94241 0.94478 0.94416 0.92234 1.19537 0.83653 0.88622 0.84671 1.90523 1.79235 1.14180 1.61707 1.41888 1.17262 1.09414 1.51470 1.19661 0.97124 0.92566 1.33570 0.87988 1.25252 0.98850 0.96012 0.97788 1.69607 1.30800 1.08673 1.45264 0.85922 0.79830 0.79167 0.79308 1.19905 1.20999 1.19925 1.22313 0.91570 1.02716 0.97987 0.94023 0.94164 0.89855 0.90149 0.93355 0.84400 0.77490 0.91842 0.89621 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.86 101.05 1.10 1.40 16 2 O -0.38 -5.26 10.31 -35.23 -0.36 -5.62 16 3 C 0.08 1.21 3.52 -25.34 -0.09 1.12 16 4 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 5 C 0.01 0.21 7.20 -2.18 -0.02 0.19 16 6 N -0.63 -10.96 6.88 -103.94 -0.72 -11.68 16 7 C 0.06 1.12 3.58 -67.22 -0.24 0.88 16 8 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 9 C 0.45 11.03 6.95 -10.98 -0.08 10.96 16 10 O -0.57 -16.23 16.17 5.55 0.09 -16.14 16 11 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 12 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 13 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 16 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.11 -1.82 6.35 -25.35 -0.16 -1.98 16 21 H 0.04 0.37 8.10 -51.93 -0.42 -0.05 16 22 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.34 5.39 8.92 -39.29 -0.35 5.04 16 27 H 0.39 9.77 7.90 -40.82 -0.32 9.44 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.09 1.56 7.85 -51.93 -0.41 1.16 16 30 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 LS Contribution 260.93 15.07 3.93 3.93 Total: -1.00 -31.98 260.93 -5.08 -37.06 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.94 Total: 10.55 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 0.27 Total: 4.44 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.05 Total: -50.47 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.27 Total: -21.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.98 -5.08 -37.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860096.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.562 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds