Wall clock time and date at job start Mon Mar 30 2020 02:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00211 * 2 1 4 4 H 1.09001 * 110.28880 * 30.67689 * 3 2 1 5 5 C 1.54388 * 110.32624 * 268.54754 * 3 2 1 6 6 N 1.48558 * 104.59594 * 217.14983 * 5 3 2 7 7 C 1.48568 * 104.22068 * 39.48270 * 6 5 3 8 8 H 1.08998 * 110.41219 * 79.29956 * 7 6 5 9 9 C 1.50704 * 110.40751 * 201.73958 * 7 6 5 10 10 O 1.21288 * 120.00394 * 18.54129 * 9 7 6 11 11 N 1.34775 * 119.99486 * 198.55029 * 9 7 6 12 12 C 1.37097 * 119.99926 * 180.02562 * 11 9 7 13 13 H 1.08003 * 120.00228 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00168 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47452 * 60.00350 * 16 14 12 18 18 H 1.48507 * 109.47031 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47383 * 299.99891 * 16 14 12 20 20 C 1.54268 * 110.41114 * 152.86257 * 3 2 1 21 21 H 1.08997 * 109.46738 * 299.99988 * 1 2 3 22 22 H 1.09002 * 109.47436 * 59.99689 * 1 2 3 23 23 H 1.08997 * 109.47497 * 180.02562 * 1 2 3 24 24 H 1.08999 * 110.40932 * 98.37113 * 5 3 2 25 25 H 1.09004 * 110.40796 * 335.92661 * 5 3 2 26 26 H 1.00901 * 110.99875 * 159.03649 * 6 5 3 27 27 H 0.96995 * 120.00297 * 359.97438 * 11 9 7 28 28 H 0.96998 * 119.99912 * 179.97438 * 15 14 12 29 29 H 1.09003 * 110.32138 * 237.83893 * 20 3 2 30 30 H 1.08998 * 110.31955 * 359.93915 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3607 2.0083 0.5216 5 6 2.2619 1.7804 -1.4473 6 7 3.5436 2.5282 -1.3783 7 6 4.3811 1.7318 -0.4447 8 1 4.8070 0.8694 -0.9575 9 6 5.4735 2.5881 0.1422 10 8 5.3811 3.7970 0.1076 11 7 6.5532 2.0106 0.7053 12 6 7.5468 2.7896 1.2397 13 1 7.4645 3.8660 1.2091 14 6 8.6597 2.1942 1.8208 15 7 8.7602 0.8845 1.8576 16 14 10.0138 3.2556 2.5482 17 1 9.4519 4.1006 3.6325 18 1 11.0819 2.3848 3.1017 19 1 10.5845 4.1252 1.4884 20 6 3.4045 1.2735 0.6595 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.4564 2.4362 -1.7776 25 1 2.3561 0.9255 -2.1169 26 1 3.9755 2.5903 -2.2881 27 1 6.6270 1.0439 0.7332 28 1 9.5373 0.4689 2.2629 29 1 3.4392 1.9608 1.5048 30 1 3.6462 0.2617 0.9848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040860096.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:16 Heat of formation + Delta-G solvation = -102.882772 kcal Electronic energy + Delta-G solvation = -14374.436787 eV Core-core repulsion = 11782.684862 eV Total energy + Delta-G solvation = -2591.751925 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.81543 -39.33568 -37.12902 -35.88621 -33.28354 -31.03012 -30.01552 -27.18472 -26.90567 -23.63906 -21.95295 -20.79778 -19.87334 -18.34424 -17.88077 -17.16558 -16.43656 -15.95523 -15.80001 -15.69939 -14.91663 -14.72785 -14.52820 -13.73216 -13.43691 -13.38249 -13.04103 -12.83219 -12.64093 -12.43104 -12.36456 -12.11259 -11.65727 -11.49469 -10.61840 -10.37191 -10.01889 -9.53176 -8.46346 -5.95849 1.40109 1.42127 1.53498 1.99432 2.29145 2.69217 2.95978 3.17860 3.56113 3.63520 3.76174 4.01861 4.15393 4.39737 4.46844 4.56255 4.58944 4.73852 4.78495 4.83742 4.89033 4.99886 5.40047 5.54410 5.99972 6.24570 6.29840 6.60061 7.12194 7.55403 8.11329 8.70882 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058719 B = 0.006556 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.731824 B = 4270.059751 C = 4543.284050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.092 3.908 4 H 0.082 0.918 5 C 0.022 3.978 6 N -0.652 5.652 7 C 0.068 3.932 8 H 0.076 0.924 9 C 0.448 3.552 10 O -0.617 6.617 11 N -0.570 5.570 12 C -0.337 4.337 13 H 0.079 0.921 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.995 3.005 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.271 1.271 20 C -0.108 4.108 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.347 0.653 27 H 0.395 0.605 28 H 0.278 0.722 29 H 0.065 0.935 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 -4.376 -4.066 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.033 3.967 4 H 0.100 0.900 5 C -0.108 4.108 6 N -0.283 5.283 7 C -0.046 4.046 8 H 0.094 0.906 9 C 0.235 3.765 10 O -0.503 6.503 11 N -0.207 5.207 12 C -0.466 4.466 13 H 0.097 0.903 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.818 3.182 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.196 1.196 20 C -0.146 4.146 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.118 0.882 24 H 0.121 0.879 25 H 0.080 0.920 26 H 0.163 0.837 27 H 0.229 0.771 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.972 -3.333 -3.546 13.855 hybrid contribution 0.953 -0.594 -0.150 1.132 sum -12.019 -3.926 -3.696 13.173 Atomic orbital electron populations 1.23020 0.79266 1.04017 1.01050 1.87917 1.21753 1.27180 1.95028 1.22746 0.93874 0.84724 0.95322 0.89956 1.23477 0.92926 0.97469 0.96903 1.63301 1.04017 1.47204 1.13806 1.22149 0.93125 0.93818 0.95489 0.90604 1.20525 0.84013 0.88716 0.83274 1.90481 1.80229 1.16401 1.63142 1.41949 1.17560 1.09369 1.51839 1.19655 0.98990 0.92013 1.35942 0.90281 1.26062 1.00401 0.97346 0.97341 1.69672 1.31554 1.09750 1.45122 0.84970 0.77074 0.77703 0.78461 1.19655 1.19389 1.19644 1.22264 0.93178 1.02320 0.96870 0.93257 0.92693 0.88184 0.87943 0.91985 0.83698 0.77118 0.91221 0.91655 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.86 113.37 1.23 1.60 16 2 O -0.40 -9.92 10.31 -148.98 -1.54 -11.46 16 3 C 0.09 2.45 3.52 31.50 0.11 2.56 16 4 H 0.08 2.04 7.84 -2.39 -0.02 2.02 16 5 C 0.02 0.54 7.20 86.45 0.62 1.16 16 6 N -0.65 -21.81 6.88 -482.77 -3.32 -25.13 16 7 C 0.07 2.53 3.58 44.31 0.16 2.69 16 8 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 9 C 0.45 22.41 6.95 87.66 0.61 23.01 16 10 O -0.62 -35.93 16.17 -3.05 -0.05 -35.98 16 11 N -0.57 -30.29 5.29 -306.99 -1.62 -31.92 16 12 C -0.34 -19.54 9.68 84.04 0.81 -18.73 16 13 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 14 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 15 N -0.92 -50.41 13.05 21.66 0.28 -50.13 16 16 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 C -0.11 -3.59 6.35 31.49 0.20 -3.39 16 21 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 22 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 25 H 0.06 1.42 8.08 -2.38 -0.02 1.40 16 26 H 0.35 10.60 8.92 -89.69 -0.80 9.80 16 27 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 28 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.06 2.41 7.85 -2.39 -0.02 2.40 16 30 H 0.09 2.92 7.99 -2.39 -0.02 2.90 16 Total: -1.00 -68.73 260.93 -0.38 -69.12 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.38 Total: 31.33 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.21 Total: 8.75 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.66 Total: -107.18 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -1.59 Total: -47.44 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.73 -0.38 -69.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860096.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.767 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds