Wall clock time and date at job start Mon Mar 30 2020 02:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99714 * 2 1 4 4 H 1.08997 * 110.28876 * 332.12256 * 3 2 1 5 5 C 1.54382 * 110.41096 * 94.31075 * 3 2 1 6 6 N 1.48856 * 104.63073 * 142.79164 * 5 3 2 7 7 C 1.48562 * 104.07618 * 320.54703 * 6 5 3 8 8 H 1.09002 * 110.41176 * 280.62937 * 7 6 5 9 9 C 1.50703 * 110.41027 * 158.30598 * 7 6 5 10 10 O 1.21293 * 119.99997 * 343.05295 * 9 7 6 11 11 N 1.34779 * 119.99852 * 163.05025 * 9 7 6 12 12 C 1.37096 * 119.99739 * 180.02562 * 11 9 7 13 13 H 1.07995 * 120.00329 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99748 * 179.97438 * 12 11 9 15 15 N 1.31409 * 119.99930 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99851 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47587 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47109 * 120.00419 * 16 14 12 19 19 H 1.48501 * 109.47241 * 239.99911 * 16 14 12 20 20 C 1.54257 * 110.32285 * 209.99860 * 3 2 1 21 21 H 1.08997 * 109.47479 * 299.99600 * 1 2 3 22 22 H 1.09000 * 109.47268 * 60.00423 * 1 2 3 23 23 H 1.09004 * 109.46796 * 180.02562 * 1 2 3 24 24 H 1.09003 * 110.41233 * 261.57223 * 5 3 2 25 25 H 1.09004 * 110.41109 * 23.89759 * 5 3 2 26 26 H 1.00899 * 111.13566 * 201.00398 * 6 5 3 27 27 H 0.96998 * 119.99612 * 359.97438 * 11 9 7 28 28 H 0.97005 * 120.00231 * 179.97438 * 15 14 12 29 29 H 1.08998 * 110.32238 * 122.10646 * 20 3 2 30 30 H 1.08997 * 110.41265 * 359.94174 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3383 2.0183 -0.4780 5 6 2.3285 1.7531 1.4428 6 7 3.6092 2.5033 1.3298 7 6 4.3995 1.7226 0.3434 8 1 4.8474 0.8505 0.8198 9 6 5.4665 2.5870 -0.2775 10 8 5.3952 3.7947 -0.1907 11 7 6.5000 2.0180 -0.9291 12 6 7.4710 2.8044 -1.4934 13 1 7.4075 3.8797 -1.4162 14 6 8.5368 2.2178 -2.1648 15 7 8.6137 0.9093 -2.2591 16 14 9.8593 3.2892 -2.9343 17 1 9.5418 4.7192 -2.6907 18 1 11.1751 2.9634 -2.3279 19 1 9.9122 3.0365 -4.3967 20 6 3.3726 1.2854 -0.7232 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.5398 2.4030 1.8220 25 1 2.4503 0.8858 2.0918 26 1 4.0840 2.5486 2.2189 27 1 6.5572 1.0522 -0.9981 28 1 9.3576 0.4998 -2.7281 29 1 3.3693 1.9884 -1.5562 30 1 3.5999 0.2802 -1.0780 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040860098.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:18 Heat of formation + Delta-G solvation = -76.650821 kcal Electronic energy + Delta-G solvation = -14374.087462 eV Core-core repulsion = 11783.473040 eV Total energy + Delta-G solvation = -2590.614422 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.33446 -37.77506 -35.80751 -33.81091 -31.21356 -29.70508 -28.66634 -26.32262 -24.94270 -22.07202 -20.78066 -18.96914 -17.84784 -17.12674 -16.29605 -15.68044 -14.98496 -14.54835 -14.48659 -13.96765 -13.39973 -13.23106 -12.89372 -12.32365 -12.08501 -11.74673 -11.48490 -11.47934 -11.25445 -11.02221 -10.47906 -10.31423 -10.18936 -9.62500 -9.47514 -8.58447 -8.00744 -7.92130 -6.38160 -3.78817 3.18483 3.29198 3.36717 3.63790 3.95790 4.15758 4.49356 4.78150 4.86446 5.11774 5.23820 5.27364 5.31333 5.38566 5.52014 5.57483 5.69765 5.81540 5.95405 6.07321 6.30154 6.38328 6.84989 7.25689 7.52788 7.58738 8.10660 8.66536 9.22253 9.59278 10.11808 10.79720 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.057655 B = 0.006588 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.529404 B = 4249.262512 C = 4534.219699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.074 0.926 5 C 0.016 3.984 6 N -0.633 5.633 7 C 0.058 3.942 8 H 0.060 0.940 9 C 0.451 3.549 10 O -0.573 6.573 11 N -0.564 5.564 12 C -0.298 4.298 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.108 4.108 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.341 0.659 27 H 0.392 0.608 28 H 0.271 0.729 29 H 0.085 0.915 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.015 -3.731 4.314 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.026 3.974 4 H 0.092 0.908 5 C -0.114 4.114 6 N -0.263 5.263 7 C -0.055 4.055 8 H 0.078 0.922 9 C 0.235 3.765 10 O -0.456 6.456 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.543 5.543 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.147 4.147 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.156 0.844 27 H 0.225 0.775 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.032 -2.631 3.827 12.897 hybrid contribution 0.794 -0.805 0.122 1.137 sum -11.237 -3.436 3.949 12.397 Atomic orbital electron populations 1.22772 0.81438 1.02476 0.99926 1.87954 1.19425 1.27906 1.94915 1.22893 0.95357 0.83969 0.95182 0.90833 1.23435 0.94213 0.96906 0.96889 1.63433 1.03527 1.47021 1.12286 1.22318 0.94481 0.94630 0.94076 0.92230 1.19552 0.83749 0.88661 0.84499 1.90526 1.77706 1.14307 1.63088 1.41900 1.20517 1.09488 1.48203 1.19759 1.00290 0.92594 1.30125 0.87878 1.25256 0.98840 0.96051 0.97829 1.69626 1.32498 1.08947 1.43270 0.85804 0.80031 0.80037 0.78499 1.19220 1.20789 1.20775 1.22333 0.91658 1.02798 0.97902 0.94174 0.94001 0.89855 0.90151 0.93308 0.84369 0.77496 0.91953 0.89656 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.85 101.05 1.10 1.39 16 2 O -0.38 -5.25 10.31 -35.23 -0.36 -5.61 16 3 C 0.08 1.21 3.54 -25.35 -0.09 1.12 16 4 H 0.07 0.99 7.81 -51.93 -0.41 0.58 16 5 C 0.02 0.22 7.22 -2.01 -0.01 0.20 16 6 N -0.63 -10.95 6.89 -103.71 -0.71 -11.67 16 7 C 0.06 1.11 3.57 -67.22 -0.24 0.87 16 8 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.45 11.04 6.96 -10.98 -0.08 10.96 16 10 O -0.57 -16.23 16.15 5.55 0.09 -16.14 16 11 N -0.56 -14.63 5.29 -10.96 -0.06 -14.69 16 12 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 13 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 16 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.11 -1.84 6.34 -25.35 -0.16 -2.00 16 21 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.04 0.37 8.10 -51.93 -0.42 -0.05 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.34 5.40 8.93 -39.29 -0.35 5.05 16 27 H 0.39 9.77 7.90 -40.82 -0.32 9.44 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.08 1.56 7.85 -51.93 -0.41 1.15 16 30 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 LS Contribution 260.92 15.07 3.93 3.93 Total: -1.00 -32.04 260.92 -5.08 -37.12 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -3.94 Total: 10.49 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 0.27 Total: 4.45 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.05 Total: -50.49 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.27 Total: -21.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.04 -5.08 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860098.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.527 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds