Wall clock time and date at job start Mon Mar 30 2020 02:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 H 1.09000 * 110.63348 * 29.29854 * 3 2 1 5 5 C 1.54317 * 110.70613 * 266.19125 * 3 2 1 6 6 N 1.47440 * 107.23437 * 219.33507 * 5 3 2 7 7 C 1.47849 * 108.56592 * 359.01066 * 6 5 3 8 8 H 1.09002 * 110.37021 * 265.15244 * 7 6 5 9 9 C 1.50709 * 110.37063 * 142.92500 * 7 6 5 10 10 O 1.21283 * 120.00119 * 341.45345 * 9 7 6 11 11 N 1.34778 * 119.99268 * 161.45339 * 9 7 6 12 12 C 1.37102 * 119.99290 * 180.02562 * 11 9 7 13 13 H 1.08001 * 120.00484 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99906 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99678 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00054 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47117 * 89.99572 * 16 14 12 18 18 H 1.48504 * 109.46910 * 209.99523 * 16 14 12 19 19 H 1.48496 * 109.46815 * 329.99176 * 16 14 12 20 20 C 1.55107 * 104.90594 * 23.97444 * 7 6 5 21 21 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 22 22 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 24 24 H 1.08994 * 109.88704 * 338.74258 * 5 3 2 25 25 H 1.08997 * 109.88816 * 99.77002 * 5 3 2 26 26 H 1.00902 * 111.00148 * 121.27955 * 6 5 3 27 27 H 0.96994 * 120.00399 * 359.97438 * 11 9 7 28 28 H 0.97002 * 119.99358 * 180.02562 * 15 14 12 29 29 H 1.09006 * 111.14685 * 205.04893 * 20 7 6 30 30 H 1.09001 * 110.92500 * 81.16567 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3537 2.0181 0.4992 5 6 2.3197 1.7649 -1.4403 6 7 3.6119 2.4739 -1.4045 7 6 4.0997 2.4933 -0.0089 8 1 3.8079 3.4217 0.4821 9 6 5.5976 2.3310 0.0256 10 8 6.1811 1.8802 -0.9374 11 7 6.2887 2.6867 1.1267 12 6 7.6514 2.5395 1.1579 13 1 8.1711 2.1389 0.3001 14 6 8.3640 2.9057 2.2932 15 7 7.7316 3.3937 3.3368 16 14 10.2208 2.7058 2.3355 17 1 10.8638 3.9470 1.8343 18 1 10.6594 2.4498 3.7310 19 1 10.6151 1.5617 1.4749 20 6 3.4083 1.2835 0.6723 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.3899 0.8991 -2.0987 25 1 1.5358 2.4355 -1.7921 26 1 4.2830 2.0337 -2.0160 27 1 5.8221 3.0476 1.8966 28 1 8.2292 3.6497 4.1291 29 1 3.3262 1.4325 1.7490 30 1 3.9353 0.3564 0.4470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040860100.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:19 Heat of formation + Delta-G solvation = -82.661671 kcal Electronic energy + Delta-G solvation = -14382.706969 eV Core-core repulsion = 11791.831897 eV Total energy + Delta-G solvation = -2590.875072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.44951 -37.87272 -35.82911 -33.95611 -31.34370 -29.47927 -28.71360 -26.30144 -25.01863 -22.01041 -20.83279 -19.18551 -18.02738 -17.09348 -16.12278 -15.67241 -15.05070 -14.58630 -14.33840 -14.00350 -13.73630 -13.36710 -13.12562 -12.37282 -11.86954 -11.64476 -11.58058 -11.36986 -11.25881 -11.06280 -10.67003 -10.41547 -10.25730 -9.70635 -9.56860 -8.48519 -8.16756 -8.02714 -6.46265 -3.87288 3.14934 3.25192 3.31092 3.56251 3.91141 4.13215 4.53201 4.71626 4.97096 5.07107 5.13240 5.21935 5.27821 5.28955 5.52383 5.64493 5.70395 5.87318 5.96014 6.14401 6.20184 6.37836 7.09838 7.19048 7.51314 7.74639 8.00592 8.53672 9.11562 9.47537 9.97097 10.70969 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058819 B = 0.006512 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.924276 B = 4298.900919 C = 4524.386509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.068 3.932 4 H 0.074 0.926 5 C 0.027 3.973 6 N -0.664 5.664 7 C 0.069 3.931 8 H 0.096 0.904 9 C 0.438 3.562 10 O -0.594 6.594 11 N -0.551 5.551 12 C -0.303 4.303 13 H 0.104 0.896 14 C 0.025 3.975 15 N -0.898 5.898 16 Si 0.932 3.068 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.135 4.135 21 H 0.041 0.959 22 H 0.083 0.917 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.358 0.642 27 H 0.394 0.606 28 H 0.273 0.727 29 H 0.084 0.916 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.201 -2.577 -2.380 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.009 3.991 4 H 0.092 0.908 5 C -0.103 4.103 6 N -0.299 5.299 7 C -0.044 4.044 8 H 0.114 0.886 9 C 0.223 3.777 10 O -0.480 6.480 11 N -0.186 5.186 12 C -0.432 4.432 13 H 0.122 0.878 14 C -0.178 4.178 15 N -0.539 5.539 16 Si 0.759 3.241 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.174 4.174 21 H 0.059 0.941 22 H 0.102 0.898 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.179 0.821 27 H 0.228 0.772 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.869 -2.328 -2.834 12.423 hybrid contribution 0.627 -0.506 0.749 1.101 sum -11.242 -2.835 -2.085 11.780 Atomic orbital electron populations 1.22779 0.81392 1.02541 0.99914 1.87949 1.19423 1.27522 1.94931 1.23493 0.95080 0.84419 0.96136 0.90799 1.23087 0.93397 0.97203 0.96601 1.61831 1.05173 1.55603 1.07271 1.22293 0.93939 0.98123 0.90064 0.88583 1.19752 0.87978 0.85127 0.84830 1.90490 1.70122 1.51212 1.36138 1.41832 1.07770 1.54901 1.14065 1.19744 0.81791 1.40181 1.01522 0.87807 1.25296 1.00844 0.96665 0.94949 1.69616 1.36903 1.42590 1.04750 0.85830 0.81944 0.78931 0.77434 1.20288 1.20861 1.19359 1.23142 0.93790 0.99884 1.00606 0.94073 0.89824 0.94057 0.92098 0.90853 0.82087 0.77239 0.91728 0.89725 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.86 101.05 1.10 1.40 16 2 O -0.38 -5.38 10.43 -35.23 -0.37 -5.74 16 3 C 0.07 0.95 3.41 -24.91 -0.08 0.87 16 4 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 5 C 0.03 0.40 7.36 -2.84 -0.02 0.38 16 6 N -0.66 -11.81 7.30 -104.94 -0.77 -12.57 16 7 C 0.07 1.30 3.81 -67.22 -0.26 1.04 16 8 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 9 C 0.44 10.51 7.07 -10.98 -0.08 10.43 16 10 O -0.59 -16.20 15.18 5.56 0.08 -16.11 16 11 N -0.55 -14.05 5.29 -10.96 -0.06 -14.10 16 12 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 13 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 14 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 15 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 16 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 C -0.13 -2.25 6.23 -24.48 -0.15 -2.40 16 21 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 24 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.36 6.99 7.29 -39.29 -0.29 6.70 16 27 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.57 8.05 -51.93 -0.42 1.15 16 LS Contribution 259.47 15.07 3.91 3.91 Total: -1.00 -30.54 259.47 -5.13 -35.67 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -3.90 Total: 12.90 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 0.27 Total: 3.68 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.10 Total: -50.24 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.28 Total: -21.86 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.54 -5.13 -35.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860100.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.991 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds