Wall clock time and date at job start Mon Mar 30 2020 02:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 H 1.09000 * 110.63348 * 29.29854 * 3 2 1 5 5 C 1.54317 * 110.70613 * 266.19125 * 3 2 1 6 6 N 1.47440 * 107.23437 * 219.33507 * 5 3 2 7 7 C 1.47849 * 108.56592 * 359.01066 * 6 5 3 8 8 H 1.09002 * 110.37021 * 265.15244 * 7 6 5 9 9 C 1.50709 * 110.37063 * 142.92500 * 7 6 5 10 10 O 1.21283 * 120.00119 * 341.45345 * 9 7 6 11 11 N 1.34778 * 119.99268 * 161.45339 * 9 7 6 12 12 C 1.37102 * 119.99290 * 180.02562 * 11 9 7 13 13 H 1.08001 * 120.00484 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99906 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99678 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00054 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47117 * 89.99572 * 16 14 12 18 18 H 1.48504 * 109.46910 * 209.99523 * 16 14 12 19 19 H 1.48496 * 109.46815 * 329.99176 * 16 14 12 20 20 C 1.55107 * 104.90594 * 23.97444 * 7 6 5 21 21 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 22 22 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 24 24 H 1.08994 * 109.88704 * 338.74258 * 5 3 2 25 25 H 1.08997 * 109.88816 * 99.77002 * 5 3 2 26 26 H 1.00902 * 111.00148 * 121.27955 * 6 5 3 27 27 H 0.96994 * 120.00399 * 359.97438 * 11 9 7 28 28 H 0.97002 * 119.99358 * 180.02562 * 15 14 12 29 29 H 1.09006 * 111.14685 * 205.04893 * 20 7 6 30 30 H 1.09001 * 110.92500 * 81.16567 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3537 2.0181 0.4992 5 6 2.3197 1.7649 -1.4403 6 7 3.6119 2.4739 -1.4045 7 6 4.0997 2.4933 -0.0089 8 1 3.8079 3.4217 0.4821 9 6 5.5976 2.3310 0.0256 10 8 6.1811 1.8802 -0.9374 11 7 6.2887 2.6867 1.1267 12 6 7.6514 2.5395 1.1579 13 1 8.1711 2.1389 0.3001 14 6 8.3640 2.9057 2.2932 15 7 7.7316 3.3937 3.3368 16 14 10.2208 2.7058 2.3355 17 1 10.8638 3.9470 1.8343 18 1 10.6594 2.4498 3.7310 19 1 10.6151 1.5617 1.4749 20 6 3.4083 1.2835 0.6723 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.3899 0.8991 -2.0987 25 1 1.5358 2.4355 -1.7921 26 1 4.2830 2.0337 -2.0160 27 1 5.8221 3.0476 1.8966 28 1 8.2292 3.6497 4.1291 29 1 3.3262 1.4325 1.7490 30 1 3.9353 0.3564 0.4470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040860100.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:19 Heat of formation + Delta-G solvation = -107.630001 kcal Electronic energy + Delta-G solvation = -14383.789677 eV Core-core repulsion = 11791.831897 eV Total energy + Delta-G solvation = -2591.957780 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.96836 -39.35926 -37.17220 -35.98049 -33.37661 -30.80622 -30.05173 -27.19610 -26.93906 -23.60292 -21.98943 -20.94324 -19.99302 -18.62516 -17.35031 -17.21494 -16.49410 -16.02838 -15.75659 -15.68055 -15.24783 -14.85414 -14.50304 -14.05191 -13.54251 -13.10524 -12.88704 -12.75006 -12.61620 -12.47861 -12.44174 -12.12758 -11.80039 -11.56754 -10.73222 -10.42980 -10.08398 -9.51679 -8.50900 -6.00605 1.35749 1.41594 1.54390 1.89197 2.27235 2.70404 2.95308 3.18353 3.44390 3.59136 3.73554 4.01449 4.24030 4.33191 4.41598 4.55808 4.57993 4.68479 4.81986 4.87830 4.92394 4.98465 5.37393 5.72448 5.95915 6.15745 6.31383 6.51618 7.05365 7.46795 8.00069 8.66075 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058819 B = 0.006512 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.924276 B = 4298.900919 C = 4524.386509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.405 6.405 3 C 0.079 3.921 4 H 0.103 0.897 5 C 0.027 3.973 6 N -0.670 5.670 7 C 0.078 3.922 8 H 0.116 0.884 9 C 0.434 3.566 10 O -0.632 6.632 11 N -0.558 5.558 12 C -0.340 4.340 13 H 0.080 0.920 14 C -0.008 4.008 15 N -0.915 5.915 16 Si 0.995 3.005 17 H -0.269 1.269 18 H -0.269 1.269 19 H -0.273 1.273 20 C -0.134 4.134 21 H 0.055 0.945 22 H 0.096 0.904 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.345 0.655 27 H 0.398 0.602 28 H 0.280 0.720 29 H 0.098 0.902 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.439 -2.272 -1.811 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C 0.020 3.980 4 H 0.120 0.880 5 C -0.103 4.103 6 N -0.304 5.304 7 C -0.035 4.035 8 H 0.134 0.866 9 C 0.222 3.778 10 O -0.520 6.520 11 N -0.193 5.193 12 C -0.469 4.469 13 H 0.098 0.902 14 C -0.209 4.209 15 N -0.555 5.555 16 Si 0.818 3.182 17 H -0.195 1.195 18 H -0.193 1.193 19 H -0.198 1.198 20 C -0.173 4.173 21 H 0.073 0.927 22 H 0.115 0.885 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.164 0.836 27 H 0.233 0.767 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.152 -2.013 -2.245 13.493 hybrid contribution 0.936 -0.634 0.546 1.255 sum -12.216 -2.647 -1.699 12.614 Atomic orbital electron populations 1.23040 0.79031 1.03974 1.01297 1.87919 1.22004 1.27390 1.95022 1.23372 0.93928 0.85297 0.95390 0.87969 1.23239 0.92263 0.97574 0.97214 1.61946 1.06001 1.56216 1.06194 1.22252 0.89882 0.99955 0.91459 0.86609 1.20710 0.90268 0.83259 0.83607 1.90455 1.71752 1.52459 1.37362 1.41868 1.07281 1.55445 1.14732 1.19712 0.83199 1.42334 1.01699 0.90228 1.26080 1.05074 0.95626 0.94123 1.69669 1.38538 1.42265 1.05063 0.84899 0.76531 0.78818 0.77913 1.19468 1.19336 1.19801 1.23093 0.95279 0.97411 1.01564 0.92654 0.88537 0.92634 0.92351 0.88120 0.83575 0.76731 0.91045 0.88354 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.86 113.37 1.23 1.60 16 2 O -0.40 -10.54 10.43 -148.98 -1.55 -12.09 16 3 C 0.08 2.03 3.41 31.78 0.11 2.14 16 4 H 0.10 2.08 7.85 -2.39 -0.02 2.06 16 5 C 0.03 0.71 7.36 86.65 0.64 1.35 16 6 N -0.67 -23.25 7.30 -485.91 -3.55 -26.80 16 7 C 0.08 2.86 3.81 44.71 0.17 3.03 16 8 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 9 C 0.43 21.31 7.07 87.66 0.62 21.93 16 10 O -0.63 -35.72 15.18 -3.04 -0.05 -35.76 16 11 N -0.56 -29.05 5.29 -306.98 -1.62 -30.67 16 12 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16 13 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 14 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 15 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 16 Si 1.00 42.77 29.55 68.60 2.03 44.79 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C -0.13 -4.34 6.23 32.05 0.20 -4.14 16 21 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 24 H 0.06 1.60 8.06 -2.39 -0.02 1.58 16 25 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.34 13.61 7.29 -89.69 -0.65 12.96 16 27 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 28 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 30 H 0.05 2.10 8.05 -2.39 -0.02 2.08 16 Total: -1.00 -66.16 259.47 -0.44 -66.60 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.23 Total: 35.42 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 4.25 Total: 7.29 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.89 Total: -106.26 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -1.60 Total: -47.85 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -66.16 -0.44 -66.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860100.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.026 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds