Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00075 * 2 1 4 4 H 1.48501 * 109.46878 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46998 * 300.00298 * 3 2 1 6 6 H 1.48498 * 109.46988 * 60.00367 * 3 2 1 7 7 C 1.37875 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47128 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.46889 * 180.02562 * 11 10 9 13 13 C 1.42905 * 113.99778 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47079 * 180.02562 * 13 12 11 15 15 H 1.09003 * 110.80308 * 305.69937 * 14 13 12 16 16 C 1.54809 * 110.90642 * 182.07349 * 14 13 12 17 17 C 1.54102 * 104.18354 * 220.91928 * 16 14 13 18 18 O 1.43742 * 107.29567 * 357.97055 * 17 16 14 19 19 C 1.44419 * 107.00022 * 26.48843 * 18 17 16 20 20 H 0.97007 * 119.99647 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47356 * 60.00204 * 9 7 2 22 22 H 1.09005 * 109.46851 * 300.00144 * 9 7 2 23 23 H 1.09008 * 109.46725 * 59.99968 * 10 9 7 24 24 H 1.08997 * 109.47213 * 300.00084 * 10 9 7 25 25 H 1.08997 * 109.46848 * 60.00117 * 11 10 9 26 26 H 1.08997 * 109.47286 * 300.00215 * 11 10 9 27 27 H 1.09004 * 109.47054 * 299.99711 * 13 12 11 28 28 H 1.09000 * 109.47187 * 59.99767 * 13 12 11 29 29 H 1.08994 * 110.48586 * 339.59061 * 16 14 13 30 30 H 1.08991 * 110.48772 * 102.11201 * 16 14 13 31 31 H 1.09002 * 109.88017 * 117.39728 * 17 16 14 32 32 H 1.08999 * 109.87904 * 238.54399 * 17 16 14 33 33 H 1.09001 * 110.65174 * 201.48475 * 19 18 17 34 34 H 1.08996 * 110.60299 * 78.47749 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 8 2.4087 -6.0733 0.0007 13 6 1.7941 -7.3634 0.0008 14 6 2.8770 -8.4442 0.0021 15 1 3.5717 -8.2972 -0.8249 16 6 2.2471 -9.8574 -0.0502 17 6 3.0985 -10.6868 0.9306 18 8 4.1318 -9.8240 1.4347 19 6 3.6285 -8.4726 1.3573 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 2.8718 -3.6044 0.8895 24 1 2.8718 -3.6044 -0.8905 25 1 0.8532 -5.0450 -0.8896 26 1 0.8537 -5.0446 0.8903 27 1 1.1736 -7.4702 0.8906 28 1 1.1742 -7.4706 -0.8894 29 1 1.2087 -9.8246 0.2796 30 1 2.3138 -10.2678 -1.0577 31 1 2.4771 -11.0407 1.7532 32 1 3.5445 -11.5339 0.4095 33 1 4.4498 -7.7560 1.3558 34 1 2.9433 -8.2708 2.1806 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049690170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -138.402276 kcal Electronic energy + Delta-G solvation = -13947.338982 eV Core-core repulsion = 11457.587159 eV Total energy + Delta-G solvation = -2489.751823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.50082 -38.81990 -35.94284 -34.17388 -33.12478 -30.44851 -28.63021 -26.43598 -24.75872 -23.37025 -22.20487 -21.36032 -18.59329 -17.93254 -17.20938 -16.96017 -16.74812 -16.41083 -16.03030 -15.29242 -14.93627 -14.40092 -14.22113 -13.75895 -13.47723 -13.06086 -12.73148 -12.69547 -12.43610 -12.33670 -12.15964 -11.83594 -11.66376 -11.54203 -11.45966 -11.17761 -10.67498 -10.57329 -10.52264 -8.22023 -6.32874 1.40736 1.40827 1.54717 2.39440 2.61522 3.06435 3.11553 3.58286 3.78379 3.96408 4.16444 4.19732 4.26073 4.31070 4.39723 4.54934 4.60401 4.63299 4.80199 4.87175 4.88352 4.91277 4.93203 5.07482 5.17036 5.20536 5.49115 5.69402 5.82118 5.89152 6.17882 6.31677 6.83091 7.36464 8.90211 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.083553 B = 0.004150 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.035732 B = 6745.231515 C = 6953.899242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.098 4.098 11 C 0.074 3.926 12 O -0.406 6.406 13 C 0.066 3.934 14 C -0.119 4.119 15 H 0.086 0.914 16 C -0.142 4.142 17 C 0.040 3.960 18 O -0.405 6.405 19 C 0.053 3.947 20 H 0.265 0.735 21 H -0.002 1.002 22 H -0.002 1.002 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -19.276 0.278 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.135 4.135 11 C -0.002 4.002 12 O -0.326 6.326 13 C -0.010 4.010 14 C -0.137 4.137 15 H 0.104 0.896 16 C -0.180 4.180 17 C -0.036 4.036 18 O -0.325 6.325 19 C -0.024 4.024 20 H 0.073 0.927 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.263 -19.222 0.358 19.501 hybrid contribution -0.350 1.100 -0.069 1.157 sum 2.912 -18.122 0.290 18.357 Atomic orbital electron populations 1.70093 1.07727 1.27825 1.51589 1.25975 0.95825 1.03361 0.94599 0.85370 0.78997 0.78615 0.77896 1.18754 1.20208 1.20205 1.21690 0.93575 0.92317 1.50727 0.92312 1.18940 0.94262 0.92510 0.95366 1.21401 0.98623 0.92288 1.01227 1.22473 0.91622 0.85961 1.00152 1.87844 1.34734 1.14487 1.95568 1.22593 0.95038 0.82029 1.01368 1.22681 0.97571 0.94396 0.99085 0.89579 1.22931 1.00704 0.92526 1.01815 1.23360 0.89627 0.93884 0.96748 1.88848 1.40418 1.17607 1.85630 1.23611 0.98702 0.83832 0.96233 0.92651 0.98397 0.98401 0.92809 0.92836 0.93165 0.93170 0.92250 0.91918 0.89011 0.88595 0.91284 0.88460 0.89416 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.41 4.97 29.85 0.15 1.55 16 10 C -0.10 -4.21 5.52 30.59 0.17 -4.05 16 11 C 0.07 2.61 5.94 71.98 0.43 3.04 16 12 O -0.41 -13.02 10.25 -148.98 -1.53 -14.55 16 13 C 0.07 1.53 5.27 71.98 0.38 1.91 16 14 C -0.12 -2.43 3.39 -9.49 -0.03 -2.47 16 15 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 16 C -0.14 -2.04 6.60 31.58 0.21 -1.83 16 17 C 0.04 0.64 7.70 72.35 0.56 1.19 16 18 O -0.41 -9.61 11.52 -148.98 -1.72 -11.32 16 19 C 0.05 1.20 7.09 72.66 0.52 1.72 16 20 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 21 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 22 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 23 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 24 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.25 8.05 -2.38 -0.02 1.23 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.08 7.86 -2.39 -0.02 1.06 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.41 7.98 -2.39 -0.02 1.39 16 Total: -1.00 -65.57 284.60 3.17 -62.40 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.04 Total: 3.09 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 3.07 Total: -29.78 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -3.24 Total: -25.87 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -65.57 3.17 -62.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049690170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.001 kcal (2) G-P(sol) polarization free energy of solvation -65.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds