Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48503 * 109.47474 * 270.00339 * 3 2 1 5 5 H 1.48500 * 109.46914 * 30.00587 * 3 2 1 6 6 H 1.48499 * 109.47188 * 150.00268 * 3 2 1 7 7 C 1.37876 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00295 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47060 * 179.97438 * 9 7 2 11 11 O 1.42896 * 109.47336 * 179.97438 * 10 9 7 12 12 C 1.42898 * 114.00215 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47643 * 180.02562 * 12 11 10 14 14 C 1.53175 * 109.54388 * 294.56185 * 13 12 11 15 15 C 1.53094 * 109.16661 * 183.14993 * 14 13 12 16 16 O 1.42898 * 109.41211 * 57.60371 * 15 14 13 17 17 C 1.42897 * 114.10001 * 298.84343 * 16 15 14 18 18 C 1.53089 * 109.41656 * 61.16248 * 17 16 15 19 19 H 0.97006 * 120.00536 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47655 * 59.99675 * 9 7 2 21 21 H 1.09000 * 109.46924 * 299.99504 * 9 7 2 22 22 H 1.09001 * 109.47623 * 59.99405 * 10 9 7 23 23 H 1.09000 * 109.46890 * 299.99578 * 10 9 7 24 24 H 1.09002 * 109.47116 * 60.00325 * 12 11 10 25 25 H 1.09007 * 109.47449 * 300.00063 * 12 11 10 26 26 H 1.09004 * 109.61242 * 54.77604 * 13 12 11 27 27 H 1.09004 * 109.52259 * 303.05258 * 14 13 12 28 28 H 1.09006 * 109.52330 * 63.24092 * 14 13 12 29 29 H 1.09006 * 109.47665 * 297.62062 * 15 14 13 30 30 H 1.08993 * 109.47955 * 177.58818 * 15 14 13 31 31 H 1.09002 * 109.48425 * 301.17758 * 17 16 15 32 32 H 1.09001 * 109.49443 * 181.15303 * 17 16 15 33 33 H 1.08997 * 109.52675 * 182.48845 * 18 17 16 34 34 H 1.08995 * 109.52428 * 62.29514 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4505 -2.6365 -0.0001 12 6 6.0317 -3.9419 0.0003 13 6 7.5569 -3.8212 0.0009 14 6 8.0209 -3.1829 -1.3119 15 6 9.5510 -3.1382 -1.3359 16 8 10.0672 -4.4619 -1.1832 17 6 9.7051 -5.0911 0.0476 18 6 8.1813 -5.2143 0.1271 19 1 -0.4851 0.8401 0.0004 20 1 3.8745 -0.6807 0.8904 21 1 3.8751 -0.6796 -0.8895 22 1 3.6585 -3.1502 -0.8902 23 1 3.6579 -3.1505 0.8897 24 1 5.7101 -4.4832 -0.8895 25 1 5.7101 -4.4826 0.8906 26 1 7.8746 -3.2018 0.8397 27 1 7.6607 -3.7759 -2.1526 28 1 7.6257 -2.1696 -1.3839 29 1 9.9091 -2.5118 -0.5189 30 1 9.8877 -2.7241 -2.2862 31 1 10.0653 -4.4903 0.8828 32 1 10.1530 -6.0837 0.0943 33 1 7.9007 -5.6537 1.0844 34 1 7.8242 -5.8483 -0.6843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052154157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -118.756086 kcal Electronic energy + Delta-G solvation = -14305.579048 eV Core-core repulsion = 11816.679148 eV Total energy + Delta-G solvation = -2488.899900 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.54327 -37.41521 -34.32109 -33.00408 -31.20959 -30.43731 -27.29110 -24.56998 -23.61701 -22.59710 -20.68721 -19.99771 -17.04415 -16.30167 -16.15682 -15.77231 -15.46189 -14.85105 -14.43138 -14.18625 -13.75739 -13.36672 -12.76408 -12.51433 -12.35290 -11.99047 -11.45309 -11.27135 -11.16213 -10.81524 -10.63004 -10.40601 -10.24467 -9.99999 -9.82023 -9.58706 -9.26732 -8.98691 -8.56849 -6.08697 -4.08322 3.31245 3.38122 3.44504 3.74052 4.08572 4.43443 4.63646 4.74618 4.90467 4.92241 5.14089 5.25872 5.27790 5.35459 5.50390 5.55813 5.58277 5.75733 5.77382 5.83720 5.98317 6.13257 6.15853 6.18677 6.31322 6.65695 7.05516 7.10071 7.36382 7.67198 7.89700 8.46231 8.93380 9.52739 11.04242 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.059946 B = 0.005235 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.973974 B = 5347.356298 C = 5667.167299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.009 4.009 10 C 0.077 3.923 11 O -0.395 6.395 12 C 0.068 3.932 13 C -0.088 4.088 14 C -0.148 4.148 15 C 0.060 3.940 16 O -0.387 6.387 17 C 0.063 3.937 18 C -0.150 4.150 19 H 0.265 0.735 20 H 0.024 0.976 21 H 0.019 0.981 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.218 -8.455 -0.196 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.046 4.046 10 C 0.001 3.999 11 O -0.315 6.315 12 C -0.009 4.009 13 C -0.107 4.107 14 C -0.185 4.185 15 C -0.017 4.017 16 O -0.306 6.306 17 C -0.014 4.014 18 C -0.188 4.188 19 H 0.074 0.926 20 H 0.042 0.958 21 H 0.038 0.962 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.271 -8.255 -0.333 20.052 hybrid contribution -0.179 0.740 0.228 0.795 sum 18.092 -7.515 -0.105 19.591 Atomic orbital electron populations 1.69902 1.06298 1.27086 1.50703 1.24955 0.94743 0.99211 0.94257 0.86744 0.80437 0.83294 0.78686 1.20137 1.21281 1.18803 1.20944 0.88829 0.94761 1.51721 0.90947 1.19532 0.96565 0.91132 0.97399 1.22629 0.77517 1.00743 0.99019 1.87854 1.22034 1.26223 1.95364 1.22374 0.92448 0.86391 0.99705 1.21165 0.94299 0.96360 0.98840 1.22192 0.95718 1.02987 0.97652 1.22632 0.93484 0.83730 1.01819 1.87903 1.74357 1.29501 1.38830 1.22534 0.94099 0.98023 0.86727 1.22188 0.96381 0.97239 1.02996 0.92571 0.95811 0.96218 0.94138 0.94124 0.93820 0.93848 0.90349 0.91207 0.89696 0.93218 0.88919 0.93218 0.88967 0.90715 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.22 4.41 -27.88 -0.12 -0.34 16 10 C 0.08 1.63 5.88 37.16 0.22 1.85 16 11 O -0.39 -7.56 9.96 -35.23 -0.35 -7.91 16 12 C 0.07 1.00 5.32 37.16 0.20 1.20 16 13 C -0.09 -1.08 2.51 -90.44 -0.23 -1.31 16 14 C -0.15 -1.80 5.29 -26.59 -0.14 -1.94 16 15 C 0.06 0.64 6.84 37.21 0.25 0.90 16 16 O -0.39 -4.54 10.76 -35.23 -0.38 -4.92 16 17 C 0.06 0.59 6.84 37.20 0.25 0.85 16 18 C -0.15 -1.49 5.42 -26.59 -0.14 -1.63 16 19 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 20 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 21 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -31.32 277.26 -6.43 -37.75 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -5.84 Total: -5.30 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.14 Total: -14.02 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.11 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.73 Total: -12.83 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.32 -6.43 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052154157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.011 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds