Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47093 * 2 1 4 4 H 1.09003 * 109.47044 * 54.41706 * 3 2 1 5 5 C 1.50697 * 109.47132 * 174.42140 * 3 2 1 6 6 H 1.08003 * 120.00202 * 119.99825 * 5 3 2 7 7 C 1.37879 * 120.00049 * 299.99661 * 5 3 2 8 8 N 1.31510 * 120.00090 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47420 * 89.99878 * 9 7 5 11 11 H 1.48505 * 109.46804 * 209.99898 * 9 7 5 12 12 H 1.48499 * 109.46850 * 329.99441 * 9 7 5 13 13 S 1.81400 * 109.46779 * 294.41949 * 3 2 1 14 14 C 1.81406 * 103.00002 * 173.29875 * 13 3 2 15 15 C 1.54260 * 110.48585 * 173.68370 * 14 13 3 16 16 C 1.53881 * 106.59682 * 142.28791 * 15 14 13 17 17 C 1.54264 * 106.64007 * 359.97438 * 16 15 14 18 18 C 1.54885 * 110.48384 * 288.46131 * 14 13 3 19 19 H 1.09003 * 109.46951 * 175.74192 * 1 2 3 20 20 H 1.08995 * 109.47210 * 295.73922 * 1 2 3 21 21 H 1.08995 * 109.47008 * 55.74301 * 1 2 3 22 22 H 1.09001 * 109.47816 * 239.99828 * 2 1 3 23 23 H 1.09003 * 109.47478 * 119.99449 * 2 1 3 24 24 H 0.97000 * 120.00720 * 180.02562 * 8 7 5 25 25 H 1.09001 * 110.53958 * 51.07003 * 14 13 3 26 26 H 1.08997 * 110.03511 * 23.00580 * 15 14 13 27 27 H 1.09003 * 110.07489 * 261.59594 * 15 14 13 28 28 H 1.09005 * 110.02671 * 119.28459 * 16 15 14 29 29 H 1.09001 * 110.03325 * 240.66220 * 16 15 14 30 30 H 1.08996 * 110.48906 * 95.09012 * 17 16 15 31 31 H 1.09002 * 110.48667 * 217.73519 * 17 16 15 32 32 H 1.09002 * 110.75712 * 321.68957 * 18 14 13 33 33 H 1.08998 * 110.75835 * 84.87752 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5973 1.9844 0.8358 5 6 3.5406 1.4448 0.1381 6 1 4.1533 1.8868 -0.6337 7 6 4.1314 0.8827 1.2499 8 7 3.3854 0.3441 2.1895 9 14 5.9915 0.8861 1.4214 10 1 6.4216 2.1214 2.1244 11 1 6.4187 -0.3023 2.2027 12 1 6.6129 0.8418 0.0734 13 16 1.5749 2.2482 -1.5573 14 6 2.0729 3.9719 -1.2896 15 6 1.8959 4.7922 -2.5840 16 6 1.3941 6.1831 -2.1578 17 6 1.2827 6.1602 -0.6193 18 6 1.1270 4.6578 -0.2728 19 1 -0.3633 -1.0249 -0.0763 20 1 -0.3633 0.4463 0.9256 21 1 -0.3633 0.5785 -0.8493 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 3.8010 -0.0510 2.9719 25 1 3.1055 4.0224 -0.9441 26 1 1.1623 4.3132 -3.2323 27 1 2.8501 4.8825 -3.1032 28 1 2.1053 6.9482 -2.4693 29 1 0.4174 6.3793 -2.6000 30 1 2.1874 6.5643 -0.1652 31 1 0.4071 6.7208 -0.2918 32 1 0.0975 4.3322 -0.4225 33 1 1.4488 4.4586 0.7493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062829636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = -37.459449 kcal Electronic energy + Delta-G solvation = -12716.321574 eV Core-core repulsion = 10673.699832 eV Total energy + Delta-G solvation = -2042.621742 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.35964 -34.56575 -31.55406 -28.50603 -28.34451 -27.28745 -23.16566 -20.63919 -20.28948 -19.51485 -16.44364 -15.95004 -15.34832 -14.91509 -14.03182 -13.50577 -13.05005 -12.95772 -12.56349 -12.12460 -11.47081 -11.27082 -11.12007 -10.95898 -10.84897 -10.74666 -10.63412 -10.44864 -10.25065 -10.09358 -9.77862 -9.62079 -9.05834 -8.74965 -8.28528 -6.58359 -6.02693 -4.18617 2.94809 3.25082 3.32139 3.36321 3.95619 4.38520 4.92866 4.98716 5.18908 5.21894 5.74705 5.81318 5.88903 5.92265 6.02677 6.16166 6.19294 6.22891 6.31968 6.35171 6.51487 6.57133 6.60249 6.76677 6.96226 7.02115 7.15848 7.53845 7.72999 7.89470 8.19353 8.81944 9.45205 10.94289 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.027097 B = 0.010756 C = 0.008751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.079716 B = 2602.454160 C = 3198.954998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C 0.120 3.880 4 H 0.042 0.958 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S -0.327 6.327 14 C -0.042 4.042 15 C -0.102 4.102 16 C -0.119 4.119 17 C -0.123 4.123 18 C -0.113 4.113 19 H 0.033 0.967 20 H 0.043 0.957 21 H 0.050 0.950 22 H 0.040 0.960 23 H 0.105 0.895 24 H 0.263 0.737 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 7.341 -4.467 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.008 4.008 4 H 0.060 0.940 5 C -0.556 4.556 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S -0.096 6.096 14 C -0.171 4.171 15 C -0.141 4.141 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.153 4.153 19 H 0.053 0.947 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.122 0.878 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.139 6.755 -5.221 9.488 hybrid contribution 1.655 0.409 1.271 2.127 sum -2.484 7.164 -3.950 8.550 Atomic orbital electron populations 1.21884 0.98562 0.99378 1.00874 1.21458 0.92369 0.97769 1.02914 1.20774 0.98235 0.94147 0.87617 0.93989 1.21358 0.90338 1.38595 1.05293 0.91837 1.24983 0.98280 0.94895 0.95508 1.69857 1.34997 1.38397 1.09384 0.86534 0.85361 0.77593 0.78282 1.20647 1.21070 1.19711 1.85983 1.82124 1.07285 1.34247 1.23660 1.02149 0.93814 0.97524 1.21983 1.01270 0.94267 0.96560 1.22118 1.00654 0.96867 0.96168 1.22373 1.01192 0.97058 0.95560 1.22814 0.99644 0.93685 0.99168 0.94740 0.93788 0.93076 0.94170 0.87753 0.92720 0.89239 0.91351 0.91747 0.92230 0.92093 0.91854 0.92012 0.90920 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.81 37.15 0.36 -2.71 16 2 C -0.11 -2.55 5.24 -26.73 -0.14 -2.69 16 3 C 0.12 3.00 2.17 -27.88 -0.06 2.94 16 4 H 0.04 1.13 8.14 -51.92 -0.42 0.71 16 5 C -0.52 -13.99 8.18 -34.44 -0.28 -14.27 16 6 H 0.06 1.75 7.71 -52.48 -0.40 1.34 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.89 -24.68 11.29 55.43 0.63 -24.05 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 13 S -0.33 -7.16 19.08 -107.50 -2.05 -9.21 16 14 C -0.04 -0.80 3.22 -25.08 -0.08 -0.88 16 15 C -0.10 -1.58 6.39 -25.61 -0.16 -1.74 16 16 C -0.12 -1.54 6.80 -25.61 -0.17 -1.72 16 17 C -0.12 -1.68 6.84 -25.03 -0.17 -1.85 16 18 C -0.11 -1.93 6.32 -24.70 -0.16 -2.09 16 19 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.05 1.02 7.03 -51.93 -0.36 0.66 16 22 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.10 2.76 5.94 -51.93 -0.31 2.45 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.09 1.85 7.89 -51.93 -0.41 1.44 16 26 H 0.07 1.08 7.79 -51.93 -0.40 0.67 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 275.63 15.07 4.15 4.15 Total: -1.00 -27.21 275.63 -8.92 -36.13 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.67 Total: 0.26 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -0.96 Total: -23.30 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.63 Total: -24.05 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -2.05 Total: -9.21 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.21 -8.92 -36.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062829636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.329 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds