Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47093 * 2 1 4 4 H 1.09003 * 109.47044 * 54.41706 * 3 2 1 5 5 C 1.50697 * 109.47132 * 174.42140 * 3 2 1 6 6 H 1.08003 * 120.00202 * 119.99825 * 5 3 2 7 7 C 1.37879 * 120.00049 * 299.99661 * 5 3 2 8 8 N 1.31510 * 120.00090 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47420 * 89.99878 * 9 7 5 11 11 H 1.48505 * 109.46804 * 209.99898 * 9 7 5 12 12 H 1.48499 * 109.46850 * 329.99441 * 9 7 5 13 13 S 1.81400 * 109.46779 * 294.41949 * 3 2 1 14 14 C 1.81406 * 103.00002 * 173.29875 * 13 3 2 15 15 C 1.54260 * 110.48585 * 173.68370 * 14 13 3 16 16 C 1.53881 * 106.59682 * 142.28791 * 15 14 13 17 17 C 1.54264 * 106.64007 * 359.97438 * 16 15 14 18 18 C 1.54885 * 110.48384 * 288.46131 * 14 13 3 19 19 H 1.09003 * 109.46951 * 175.74192 * 1 2 3 20 20 H 1.08995 * 109.47210 * 295.73922 * 1 2 3 21 21 H 1.08995 * 109.47008 * 55.74301 * 1 2 3 22 22 H 1.09001 * 109.47816 * 239.99828 * 2 1 3 23 23 H 1.09003 * 109.47478 * 119.99449 * 2 1 3 24 24 H 0.97000 * 120.00720 * 180.02562 * 8 7 5 25 25 H 1.09001 * 110.53958 * 51.07003 * 14 13 3 26 26 H 1.08997 * 110.03511 * 23.00580 * 15 14 13 27 27 H 1.09003 * 110.07489 * 261.59594 * 15 14 13 28 28 H 1.09005 * 110.02671 * 119.28459 * 16 15 14 29 29 H 1.09001 * 110.03325 * 240.66220 * 16 15 14 30 30 H 1.08996 * 110.48906 * 95.09012 * 17 16 15 31 31 H 1.09002 * 110.48667 * 217.73519 * 17 16 15 32 32 H 1.09002 * 110.75712 * 321.68957 * 18 14 13 33 33 H 1.08998 * 110.75835 * 84.87752 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5973 1.9844 0.8358 5 6 3.5406 1.4448 0.1381 6 1 4.1533 1.8868 -0.6337 7 6 4.1314 0.8827 1.2499 8 7 3.3854 0.3441 2.1895 9 14 5.9915 0.8861 1.4214 10 1 6.4216 2.1214 2.1244 11 1 6.4187 -0.3023 2.2027 12 1 6.6129 0.8418 0.0734 13 16 1.5749 2.2482 -1.5573 14 6 2.0729 3.9719 -1.2896 15 6 1.8959 4.7922 -2.5840 16 6 1.3941 6.1831 -2.1578 17 6 1.2827 6.1602 -0.6193 18 6 1.1270 4.6578 -0.2728 19 1 -0.3633 -1.0249 -0.0763 20 1 -0.3633 0.4463 0.9256 21 1 -0.3633 0.5785 -0.8493 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 3.8010 -0.0510 2.9719 25 1 3.1055 4.0224 -0.9441 26 1 1.1623 4.3132 -3.2323 27 1 2.8501 4.8825 -3.1032 28 1 2.1053 6.9482 -2.4693 29 1 0.4174 6.3793 -2.6000 30 1 2.1874 6.5643 -0.1652 31 1 0.4071 6.7208 -0.2918 32 1 0.0975 4.3322 -0.4225 33 1 1.4488 4.4586 0.7493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062829636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = -50.161606 kcal Electronic energy + Delta-G solvation = -12716.872381 eV Core-core repulsion = 10673.699832 eV Total energy + Delta-G solvation = -2043.172549 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.62152 -36.55591 -33.55559 -29.95684 -29.59810 -29.07804 -25.16093 -22.38758 -21.60216 -20.91120 -18.52939 -17.39723 -17.09081 -16.43621 -15.90032 -14.94258 -14.80830 -14.29133 -14.13898 -13.94232 -13.33205 -13.10341 -12.82325 -12.56334 -12.36007 -12.10759 -12.07162 -11.95848 -11.78690 -11.68655 -11.45457 -11.26068 -10.96731 -10.71482 -10.24553 -8.45004 -8.02859 -6.34103 1.27839 1.37450 1.38743 1.49028 2.11454 2.40249 3.08548 3.65321 3.74748 4.07495 4.43677 4.52802 4.54009 4.57253 4.60707 4.63278 4.71120 4.82145 4.92896 5.01652 5.09728 5.20216 5.24944 5.27755 5.29867 5.36949 5.49104 5.51907 5.68543 5.82593 6.15545 6.69187 7.32434 8.85295 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.027097 B = 0.010756 C = 0.008751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.079716 B = 2602.454160 C = 3198.954998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C 0.118 3.882 4 H 0.013 0.987 5 C -0.534 4.534 6 H 0.052 0.948 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.271 1.271 13 S -0.329 6.329 14 C -0.044 4.044 15 C -0.098 4.098 16 C -0.111 4.111 17 C -0.115 4.115 18 C -0.113 4.113 19 H 0.057 0.943 20 H 0.041 0.959 21 H 0.056 0.944 22 H 0.031 0.969 23 H 0.078 0.922 24 H 0.265 0.735 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 8.725 -5.327 10.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C -0.010 4.010 4 H 0.031 0.969 5 C -0.573 4.573 6 H 0.071 0.929 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.196 1.196 13 S -0.098 6.098 14 C -0.173 4.173 15 C -0.137 4.137 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.153 4.153 19 H 0.076 0.924 20 H 0.060 0.940 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.249 8.141 -6.084 11.016 hybrid contribution 1.678 0.000 1.524 2.267 sum -2.571 8.141 -4.560 9.679 Atomic orbital electron populations 1.21752 0.95761 1.01008 1.00995 1.21336 0.94865 0.96832 1.01141 1.20554 0.97130 0.94760 0.88549 0.96900 1.21532 0.91507 1.38899 1.05345 0.92932 1.25704 1.02456 0.94475 0.95171 1.69970 1.36585 1.38662 1.09684 0.85591 0.80302 0.77857 0.78210 1.19976 1.20412 1.19568 1.85794 1.82039 1.09972 1.32043 1.23839 1.01111 0.92008 1.00330 1.21999 1.01874 0.95238 0.94567 1.22107 1.02194 0.95377 0.95287 1.22360 1.02484 0.94222 0.96354 1.22763 0.98847 0.96416 0.97246 0.92396 0.93959 0.92507 0.95011 0.90335 0.92560 0.91650 0.91468 0.91043 0.90030 0.90251 0.91548 0.89677 0.90986 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 9.81 71.98 0.71 -4.92 16 2 C -0.10 -5.04 5.24 30.59 0.16 -4.87 16 3 C 0.12 6.08 2.17 29.85 0.06 6.15 16 4 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 5 C -0.53 -29.66 8.18 25.60 0.21 -29.45 16 6 H 0.05 2.96 7.71 -2.91 -0.02 2.94 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -51.62 11.29 21.45 0.24 -51.37 16 9 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 S -0.33 -14.52 19.08 -56.49 -1.08 -15.60 16 14 C -0.04 -1.64 3.22 31.67 0.10 -1.54 16 15 C -0.10 -2.83 6.39 31.32 0.20 -2.63 16 16 C -0.11 -2.47 6.80 31.32 0.21 -2.26 16 17 C -0.12 -2.84 6.84 31.70 0.22 -2.62 16 18 C -0.11 -3.80 6.32 31.91 0.20 -3.59 16 19 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 20 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.06 2.24 7.03 -2.39 -0.02 2.22 16 22 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.08 4.28 5.94 -2.39 -0.01 4.26 16 24 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.06 2.75 7.89 -2.39 -0.02 2.73 16 26 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -58.93 275.63 4.76 -54.17 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.05 Total: 11.30 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 2.52 Total: -44.04 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.24 Total: -51.37 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -14.52 SS G_CDS: -1.08 Total: -15.60 kcal Total: -58.93 4.76 -54.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062829636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.006 kcal (2) G-P(sol) polarization free energy of solvation -58.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds