Wall clock time and date at job start Mon Mar 30 2020 02:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47050 * 2 1 4 4 H 1.08997 * 109.47194 * 179.21504 * 3 2 1 5 5 C 1.50701 * 109.47138 * 59.22082 * 3 2 1 6 6 H 1.08000 * 120.00235 * 242.54342 * 5 3 2 7 7 C 1.37880 * 120.00157 * 62.54138 * 5 3 2 8 8 N 1.31516 * 120.00109 * 195.94610 * 7 5 3 9 9 Si 1.86801 * 119.99639 * 15.94860 * 7 5 3 10 10 H 1.48493 * 109.47348 * 91.49636 * 9 7 5 11 11 H 1.48508 * 109.46905 * 211.49402 * 9 7 5 12 12 H 1.48495 * 109.47293 * 331.49021 * 9 7 5 13 13 S 1.81396 * 109.47419 * 299.21809 * 3 2 1 14 14 C 1.81397 * 103.00211 * 292.68542 * 13 3 2 15 15 C 1.54886 * 110.75749 * 173.89994 * 14 13 3 16 16 C 1.54267 * 104.31281 * 156.31916 * 15 14 13 17 17 C 1.53873 * 106.60107 * 336.32837 * 16 15 14 18 18 C 1.54268 * 106.59554 * 359.97438 * 17 16 15 19 19 H 1.09000 * 109.47130 * 64.68714 * 1 2 3 20 20 H 1.09000 * 109.47401 * 184.68818 * 1 2 3 21 21 H 1.09002 * 109.47052 * 304.68551 * 1 2 3 22 22 H 1.08997 * 109.46830 * 240.00248 * 2 1 3 23 23 H 1.08998 * 109.47129 * 120.00216 * 2 1 3 24 24 H 0.97003 * 119.99594 * 180.02562 * 8 7 5 25 25 H 1.08994 * 110.81611 * 50.55934 * 14 13 3 26 26 H 1.09001 * 110.48530 * 37.58035 * 15 14 13 27 27 H 1.08995 * 110.48617 * 275.06857 * 15 14 13 28 28 H 1.09006 * 110.03000 * 95.61005 * 16 15 14 29 29 H 1.08997 * 110.03497 * 217.03377 * 16 15 14 30 30 H 1.08993 * 110.03273 * 119.28231 * 17 16 15 31 31 H 1.09002 * 110.02710 * 240.66655 * 17 16 15 32 32 H 1.09005 * 110.48492 * 142.29476 * 18 17 16 33 33 H 1.09002 * 110.48349 * 264.79652 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4425 0.0141 5 6 1.5219 2.1584 1.2207 6 1 0.8689 3.0115 1.1099 7 6 1.8816 1.7244 2.4790 8 7 1.2047 2.1275 3.5321 9 14 3.3304 0.5639 2.6880 10 1 4.5683 1.3528 2.9121 11 1 3.0902 -0.3225 3.8550 12 1 3.4843 -0.2613 1.4631 13 16 1.4545 2.2909 -1.4926 14 6 2.3458 1.4384 -2.8228 15 6 1.8598 1.9268 -4.2100 16 6 3.0410 1.6257 -5.1555 17 6 4.3036 1.5698 -4.2778 18 6 3.8457 1.8394 -2.8295 19 1 -0.3633 0.4394 -0.9290 20 1 -0.3634 -1.0242 0.0840 21 1 -0.3633 0.5848 0.8451 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.4580 1.8225 4.4174 25 1 2.2348 0.3579 -2.7329 26 1 1.6530 2.9967 -4.1868 27 1 0.9728 1.3743 -4.5196 28 1 2.8878 0.6668 -5.6508 29 1 3.1368 2.4184 -5.8975 30 1 4.7630 0.5838 -4.3471 31 1 5.0125 2.3349 -4.5943 32 1 4.4084 1.2210 -2.1302 33 1 3.9620 2.8948 -2.5830 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062829637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:58 Heat of formation + Delta-G solvation = -26.936950 kcal Electronic energy + Delta-G solvation = -12774.738941 eV Core-core repulsion = 10732.573488 eV Total energy + Delta-G solvation = -2042.165453 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.55057 -34.90369 -31.77840 -28.58659 -28.53561 -27.40814 -23.44944 -20.66291 -20.44746 -19.99040 -16.65595 -16.04246 -15.63506 -14.79368 -13.88565 -13.76202 -13.53994 -13.17594 -12.86103 -12.50631 -11.96385 -11.30076 -11.19493 -11.08689 -10.95233 -10.78261 -10.58496 -10.53137 -10.33439 -10.22213 -9.96727 -9.48401 -9.29359 -8.68344 -8.47502 -6.66470 -6.18796 -4.14123 2.65300 3.21396 3.29945 3.32993 3.72196 4.33772 4.71898 4.80529 5.02836 5.11999 5.53140 5.55397 5.65429 5.76224 5.78470 5.97770 6.00690 6.04271 6.12774 6.16839 6.27739 6.35444 6.42736 6.51017 6.71276 6.86238 6.98833 7.11344 7.43407 7.57366 8.34153 8.87859 9.42164 10.93247 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.041792 B = 0.009455 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.831690 B = 2960.813265 C = 3182.647232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.077 3.923 4 H 0.035 0.965 5 C -0.504 4.504 6 H 0.082 0.918 7 C 0.087 3.913 8 N -0.884 5.884 9 Si 0.859 3.141 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.253 1.253 13 S -0.262 6.262 14 C -0.072 4.072 15 C -0.098 4.098 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.117 4.117 19 H 0.054 0.946 20 H 0.026 0.974 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.060 0.940 24 H 0.266 0.734 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -3.498 -13.154 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.051 4.051 4 H 0.053 0.947 5 C -0.543 4.543 6 H 0.100 0.900 7 C -0.118 4.118 8 N -0.521 5.521 9 Si 0.686 3.314 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.177 1.177 13 S -0.030 6.030 14 C -0.201 4.201 15 C -0.137 4.137 16 C -0.159 4.159 17 C -0.162 4.162 18 C -0.156 4.156 19 H 0.073 0.927 20 H 0.045 0.955 21 H 0.094 0.906 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.352 -2.647 -13.014 13.697 hybrid contribution 1.713 -1.686 0.488 2.453 sum 5.065 -4.333 -12.526 14.189 Atomic orbital electron populations 1.21708 0.95381 0.99087 1.03398 1.22102 0.97475 0.97278 0.99147 1.21065 0.97331 0.93818 0.92931 0.94653 1.20333 1.31147 1.15685 0.87130 0.90019 1.24784 0.95973 0.95582 0.95466 1.69945 1.37912 1.45314 0.98927 0.87297 0.84086 0.81629 0.78418 1.20421 1.21085 1.17733 1.86562 1.61959 1.52282 1.02167 1.24141 0.97280 1.01844 0.96832 1.22145 0.97580 1.01718 0.92255 1.22127 0.94805 1.01205 0.97766 1.22139 0.97400 1.01208 0.95405 1.22776 0.94495 1.02363 0.96003 0.92673 0.95473 0.90626 0.95325 0.92160 0.92389 0.89955 0.90880 0.91393 0.92083 0.91886 0.92229 0.91955 0.91896 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.42 37.16 0.35 -2.57 16 2 C -0.12 -2.63 4.98 -26.73 -0.13 -2.77 16 3 C 0.08 1.82 2.05 -27.89 -0.06 1.77 16 4 H 0.04 0.85 6.94 -51.93 -0.36 0.49 16 5 C -0.50 -13.96 7.66 -34.44 -0.26 -14.22 16 6 H 0.08 2.51 7.96 -52.49 -0.42 2.10 16 7 C 0.09 2.43 5.34 -17.82 -0.10 2.33 16 8 N -0.88 -26.32 13.96 55.43 0.77 -25.54 16 9 Si 0.86 20.69 25.85 -169.99 -4.39 16.30 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.25 -5.72 5.31 56.52 0.30 -5.42 16 13 S -0.26 -5.48 19.15 -107.50 -2.06 -7.54 16 14 C -0.07 -1.18 3.26 -24.54 -0.08 -1.26 16 15 C -0.10 -1.34 6.27 -25.07 -0.16 -1.50 16 16 C -0.12 -1.36 6.80 -25.61 -0.17 -1.53 16 17 C -0.12 -1.46 6.80 -25.61 -0.17 -1.64 16 18 C -0.12 -1.76 6.30 -24.87 -0.16 -1.92 16 19 H 0.05 1.11 7.13 -51.93 -0.37 0.74 16 20 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.07 1.81 7.03 -51.93 -0.37 1.45 16 22 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 23 H 0.06 1.37 4.57 -51.93 -0.24 1.13 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.08 1.37 6.95 -51.93 -0.36 1.01 16 26 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 LS Contribution 266.20 15.07 4.01 4.01 Total: -1.00 -28.49 266.20 -8.11 -36.60 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.50 Total: -0.53 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -0.94 Total: -23.31 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.77 Total: -25.54 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.39 Total: 16.30 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -2.06 Total: -7.54 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.49 -8.11 -36.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062829637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.664 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds