Wall clock time and date at job start Mon Mar 30 2020 02:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47050 * 2 1 4 4 H 1.08997 * 109.47194 * 179.21504 * 3 2 1 5 5 C 1.50701 * 109.47138 * 59.22082 * 3 2 1 6 6 H 1.08000 * 120.00235 * 242.54342 * 5 3 2 7 7 C 1.37880 * 120.00157 * 62.54138 * 5 3 2 8 8 N 1.31516 * 120.00109 * 195.94610 * 7 5 3 9 9 Si 1.86801 * 119.99639 * 15.94860 * 7 5 3 10 10 H 1.48493 * 109.47348 * 91.49636 * 9 7 5 11 11 H 1.48508 * 109.46905 * 211.49402 * 9 7 5 12 12 H 1.48495 * 109.47293 * 331.49021 * 9 7 5 13 13 S 1.81396 * 109.47419 * 299.21809 * 3 2 1 14 14 C 1.81397 * 103.00211 * 292.68542 * 13 3 2 15 15 C 1.54886 * 110.75749 * 173.89994 * 14 13 3 16 16 C 1.54267 * 104.31281 * 156.31916 * 15 14 13 17 17 C 1.53873 * 106.60107 * 336.32837 * 16 15 14 18 18 C 1.54268 * 106.59554 * 359.97438 * 17 16 15 19 19 H 1.09000 * 109.47130 * 64.68714 * 1 2 3 20 20 H 1.09000 * 109.47401 * 184.68818 * 1 2 3 21 21 H 1.09002 * 109.47052 * 304.68551 * 1 2 3 22 22 H 1.08997 * 109.46830 * 240.00248 * 2 1 3 23 23 H 1.08998 * 109.47129 * 120.00216 * 2 1 3 24 24 H 0.97003 * 119.99594 * 180.02562 * 8 7 5 25 25 H 1.08994 * 110.81611 * 50.55934 * 14 13 3 26 26 H 1.09001 * 110.48530 * 37.58035 * 15 14 13 27 27 H 1.08995 * 110.48617 * 275.06857 * 15 14 13 28 28 H 1.09006 * 110.03000 * 95.61005 * 16 15 14 29 29 H 1.08997 * 110.03497 * 217.03377 * 16 15 14 30 30 H 1.08993 * 110.03273 * 119.28231 * 17 16 15 31 31 H 1.09002 * 110.02710 * 240.66655 * 17 16 15 32 32 H 1.09005 * 110.48492 * 142.29476 * 18 17 16 33 33 H 1.09002 * 110.48349 * 264.79652 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4425 0.0141 5 6 1.5219 2.1584 1.2207 6 1 0.8689 3.0115 1.1099 7 6 1.8816 1.7244 2.4790 8 7 1.2047 2.1275 3.5321 9 14 3.3304 0.5639 2.6880 10 1 4.5683 1.3528 2.9121 11 1 3.0902 -0.3225 3.8550 12 1 3.4843 -0.2613 1.4631 13 16 1.4545 2.2909 -1.4926 14 6 2.3458 1.4384 -2.8228 15 6 1.8598 1.9268 -4.2100 16 6 3.0410 1.6257 -5.1555 17 6 4.3036 1.5698 -4.2778 18 6 3.8457 1.8394 -2.8295 19 1 -0.3633 0.4394 -0.9290 20 1 -0.3634 -1.0242 0.0840 21 1 -0.3633 0.5848 0.8451 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.4580 1.8225 4.4174 25 1 2.2348 0.3579 -2.7329 26 1 1.6530 2.9967 -4.1868 27 1 0.9728 1.3743 -4.5196 28 1 2.8878 0.6668 -5.6508 29 1 3.1368 2.4184 -5.8975 30 1 4.7630 0.5838 -4.3471 31 1 5.0125 2.3349 -4.5943 32 1 4.4084 1.2210 -2.1302 33 1 3.9620 2.8948 -2.5830 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062829637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:57 Heat of formation + Delta-G solvation = -42.517603 kcal Electronic energy + Delta-G solvation = -12775.414568 eV Core-core repulsion = 10732.573488 eV Total energy + Delta-G solvation = -2042.841080 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.63244 -36.80742 -33.85795 -29.72966 -29.62870 -29.26756 -25.41184 -22.38129 -21.75029 -21.03441 -18.63246 -17.51667 -17.10765 -16.28773 -15.64461 -15.30431 -15.11742 -14.66923 -14.27780 -14.17167 -13.59773 -12.96076 -12.69408 -12.47520 -12.38525 -12.13634 -12.05870 -11.92491 -11.81352 -11.62987 -11.44153 -11.23413 -11.09639 -10.60115 -10.35785 -8.35762 -8.34932 -6.35804 1.10074 1.30109 1.34574 1.42332 2.06759 2.30264 2.98277 3.60608 3.75109 4.03047 4.25091 4.36424 4.47025 4.50811 4.52142 4.58617 4.62335 4.81879 4.89874 4.94037 5.09304 5.11165 5.18028 5.21561 5.27973 5.32132 5.35048 5.49994 5.53182 5.70510 6.15655 6.63217 7.23564 8.80612 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.041792 B = 0.009455 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.831690 B = 2960.813265 C = 3182.647232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.034 0.966 5 C -0.507 4.507 6 H 0.032 0.968 7 C 0.032 3.968 8 N -0.934 5.934 9 Si 0.922 3.078 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.225 1.225 13 S -0.302 6.302 14 C -0.062 4.062 15 C -0.097 4.097 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.120 4.120 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.035 0.965 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.269 0.731 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -5.470 -15.635 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C -0.051 4.051 4 H 0.052 0.948 5 C -0.546 4.546 6 H 0.050 0.950 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.746 3.254 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.148 1.148 13 S -0.070 6.070 14 C -0.190 4.190 15 C -0.136 4.136 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.160 4.160 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.985 -4.618 -15.512 16.936 hybrid contribution 1.130 -0.978 1.192 1.912 sum 6.115 -5.596 -14.320 16.546 Atomic orbital electron populations 1.21600 0.95134 1.00159 1.01896 1.22056 0.97720 0.95876 1.00163 1.20891 0.96975 0.94730 0.92505 0.94770 1.20441 1.30146 1.14541 0.89424 0.94997 1.25639 0.98542 0.97670 0.94939 1.70083 1.39945 1.47580 0.99617 0.86273 0.79924 0.79754 0.79474 1.20151 1.20731 1.14786 1.86642 1.63348 1.53665 1.03330 1.24299 0.97673 1.01360 0.95699 1.22181 0.99195 1.01204 0.90980 1.22117 0.92893 1.02838 0.97293 1.22123 0.98023 1.02515 0.92852 1.22772 0.93427 1.01367 0.98410 0.92127 0.92594 0.94599 0.92348 0.92806 0.92228 0.89451 0.91824 0.90494 0.90299 0.90215 0.90815 0.90604 0.92474 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 9.42 71.98 0.68 -4.71 16 2 C -0.12 -4.97 4.98 30.59 0.15 -4.82 16 3 C 0.08 3.66 2.05 29.85 0.06 3.72 16 4 H 0.03 1.60 6.94 -2.39 -0.02 1.59 16 5 C -0.51 -29.07 7.66 25.60 0.20 -28.88 16 6 H 0.03 2.09 7.96 -2.91 -0.02 2.07 16 7 C 0.03 1.85 5.34 84.66 0.45 2.31 16 8 N -0.93 -57.66 13.96 21.45 0.30 -57.36 16 9 Si 0.92 42.59 25.85 68.60 1.77 44.36 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.22 -9.30 5.31 99.48 0.53 -8.77 16 13 S -0.30 -12.61 19.15 -56.49 -1.08 -13.70 16 14 C -0.06 -1.88 3.26 32.01 0.10 -1.78 16 15 C -0.10 -2.37 6.27 31.67 0.20 -2.17 16 16 C -0.11 -2.06 6.80 31.32 0.21 -1.85 16 17 C -0.12 -2.31 6.80 31.32 0.21 -2.09 16 18 C -0.12 -3.34 6.30 31.80 0.20 -3.14 16 19 H 0.06 2.40 7.13 -2.39 -0.02 2.38 16 20 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.03 1.74 7.03 -2.39 -0.02 1.73 16 22 H 0.06 2.10 6.86 -2.39 -0.02 2.09 16 23 H 0.05 2.31 4.57 -2.39 -0.01 2.30 16 24 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.09 2.61 6.95 -2.39 -0.02 2.59 16 26 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 Total: -1.00 -63.83 266.20 4.34 -59.49 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.88 Total: 10.61 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 2.47 Total: -43.40 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.30 Total: -57.36 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.77 Total: 44.36 kcal Atomic # 16 Polarization: -12.61 SS G_CDS: -1.08 Total: -13.70 kcal Total: -63.83 4.34 -59.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062829637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.976 kcal (2) G-P(sol) polarization free energy of solvation -63.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds