Wall clock time and date at job start Mon Mar 30 2020 02:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47340 * 2 1 4 4 C 1.50702 * 109.46874 * 119.99619 * 2 1 3 5 5 H 1.08001 * 120.00358 * 114.37718 * 4 2 1 6 6 C 1.37878 * 119.99853 * 294.37281 * 4 2 1 7 7 N 1.31517 * 120.00142 * 156.60718 * 6 4 2 8 8 Si 1.86805 * 120.00207 * 336.87713 * 6 4 2 9 9 H 1.48497 * 109.47069 * 179.72579 * 8 6 4 10 10 H 1.48499 * 109.46948 * 299.72710 * 8 6 4 11 11 H 1.48498 * 109.46690 * 59.72514 * 8 6 4 12 12 S 1.81400 * 109.47713 * 239.99589 * 2 1 3 13 13 C 1.81403 * 102.99737 * 64.99883 * 12 2 1 14 14 C 1.52998 * 109.46828 * 180.02562 * 13 12 2 15 15 C 1.54269 * 110.03492 * 292.91023 * 14 13 12 16 16 C 1.54966 * 104.15717 * 217.14039 * 15 14 13 17 17 C 1.54883 * 102.78145 * 37.88676 * 16 15 14 18 18 C 1.53873 * 110.03292 * 175.69074 * 14 13 12 19 19 H 1.09000 * 109.47028 * 173.01846 * 1 2 3 20 20 H 1.08997 * 109.47845 * 293.01946 * 1 2 3 21 21 H 1.09005 * 109.47030 * 53.02172 * 1 2 3 22 22 H 0.97005 * 119.99505 * 355.20317 * 7 6 4 23 23 H 1.08998 * 109.47004 * 300.00333 * 13 12 2 24 24 H 1.09001 * 109.46739 * 60.00703 * 13 12 2 25 25 H 1.09001 * 110.01869 * 54.30476 * 14 13 12 26 26 H 1.09002 * 110.48277 * 335.78384 * 15 14 13 27 27 H 1.08994 * 110.48805 * 98.42850 * 15 14 13 28 28 H 1.09001 * 110.71716 * 279.56662 * 16 15 14 29 29 H 1.09008 * 110.91984 * 156.29665 * 16 15 14 30 30 H 1.09001 * 110.48882 * 203.40465 * 17 16 15 31 31 H 1.09000 * 110.59967 * 80.81819 * 17 16 15 32 32 H 1.09001 * 110.03685 * 238.57174 * 18 14 13 33 33 H 1.09010 * 110.03195 * 359.95683 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1342 6 6 1.7974 -0.1754 2.4794 7 7 1.8021 -0.9536 3.5396 8 14 1.4650 1.6535 2.6648 9 1 1.2389 1.9727 4.0973 10 1 2.6331 2.4220 2.1647 11 1 0.2589 2.0194 1.8796 12 16 2.1348 -0.8552 -1.4810 13 6 1.5665 0.2152 -2.8309 14 6 2.0042 -0.3787 -4.1713 15 6 3.5408 -0.3244 -4.2969 16 6 3.7876 -0.0011 -5.7922 17 6 2.6492 0.9968 -6.1195 18 6 1.4374 0.4605 -5.3298 19 1 -0.3633 -1.0200 -0.1249 20 1 -0.3635 0.4018 0.9458 21 1 -0.3633 0.6182 -0.8210 22 1 1.9014 -1.9130 3.4366 23 1 0.4793 0.2879 -2.8037 24 1 2.0003 1.2083 -2.7142 25 1 1.6590 -1.4094 -4.2532 26 1 3.9476 0.4644 -3.6641 27 1 3.9791 -1.2878 -4.0366 28 1 3.6994 -0.9010 -6.4009 29 1 4.7627 0.4651 -5.9338 30 1 2.4379 0.9972 -7.1888 31 1 2.9103 2.0001 -5.7829 32 1 0.8179 -0.1630 -5.9744 33 1 0.8499 1.2905 -4.9371 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062836085.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:42 Heat of formation + Delta-G solvation = -37.651641 kcal Electronic energy + Delta-G solvation = -12373.096739 eV Core-core repulsion = 10330.466662 eV Total energy + Delta-G solvation = -2042.630076 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.18969 -34.01613 -31.28669 -30.83490 -28.62775 -25.21271 -24.58826 -21.02495 -20.65809 -19.46658 -17.54635 -16.15751 -15.22744 -14.84430 -14.07848 -13.80343 -13.62054 -13.28433 -12.91669 -12.34979 -12.08067 -11.73482 -11.39566 -11.12541 -10.97417 -10.80740 -10.60893 -10.57261 -10.43272 -10.31222 -10.15113 -9.77596 -9.21525 -8.77628 -8.29358 -6.73114 -6.56703 -4.16283 2.64668 3.33147 3.38734 3.54427 3.77075 4.42782 4.64899 4.69550 4.77543 5.10960 5.29313 5.43362 5.49669 5.66443 5.68399 5.70151 5.84496 5.91172 6.00584 6.11481 6.13069 6.24260 6.31799 6.40298 6.44312 6.45591 6.54886 6.86170 7.20675 7.82681 8.30779 8.79310 9.46934 10.80909 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.054676 B = 0.006938 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.987558 B = 4034.853696 C = 4141.673445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.033 0.967 4 C -0.594 4.594 5 H 0.066 0.934 6 C 0.046 3.954 7 N -0.891 5.891 8 Si 1.035 2.965 9 H -0.281 1.281 10 H -0.281 1.281 11 H -0.277 1.277 12 S -0.284 6.284 13 C -0.087 4.087 14 C -0.073 4.073 15 C -0.115 4.115 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.118 4.118 19 H 0.055 0.945 20 H 0.058 0.942 21 H 0.022 0.978 22 H 0.272 0.728 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 4.383 -16.312 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.048 4.048 3 H 0.051 0.949 4 C -0.633 4.633 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.523 5.523 8 Si 0.862 3.138 9 H -0.207 1.207 10 H -0.207 1.207 11 H -0.203 1.203 12 S -0.055 6.055 13 C -0.236 4.236 14 C -0.092 4.092 15 C -0.153 4.153 16 C -0.164 4.164 17 C -0.161 4.161 18 C -0.157 4.157 19 H 0.074 0.926 20 H 0.077 0.923 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.005 4.605 -15.235 15.916 hybrid contribution -0.475 -0.084 -0.976 1.089 sum -0.470 4.521 -16.212 16.837 Atomic orbital electron populations 1.22416 0.97475 1.00816 0.99684 1.20968 0.94334 0.96894 0.92642 0.94902 1.21478 1.41400 1.10982 0.89399 0.91573 1.25695 0.93210 1.05787 0.91485 1.70839 1.43188 1.06598 1.31666 0.84161 0.77266 0.75918 0.76431 1.20700 1.20749 1.20326 1.86696 1.76573 1.40085 1.02186 1.23480 1.02747 1.01092 0.96261 1.21518 0.95997 0.99549 0.92185 1.22430 0.94967 1.02370 0.95498 1.22532 0.98135 0.98846 0.96876 1.22345 0.95432 0.99032 0.99325 1.22236 0.97644 0.99350 0.96474 0.92611 0.92331 0.95897 0.91781 0.91148 0.91187 0.90572 0.91108 0.91322 0.91815 0.91847 0.92087 0.91785 0.91901 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.73 37.15 0.32 -2.90 16 2 C 0.08 1.97 2.36 -27.89 -0.07 1.90 16 3 H 0.03 0.80 6.72 -51.92 -0.35 0.46 16 4 C -0.59 -16.96 8.79 -34.44 -0.30 -17.26 16 5 H 0.07 2.07 7.96 -52.49 -0.42 1.66 16 6 C 0.05 1.33 5.19 -17.82 -0.09 1.24 16 7 N -0.89 -27.03 13.70 55.43 0.76 -26.27 16 8 Si 1.03 24.76 26.44 -169.99 -4.50 20.27 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.13 6.15 56.52 0.35 -5.79 16 12 S -0.28 -6.16 20.61 -107.50 -2.22 -8.37 16 13 C -0.09 -1.46 4.76 37.16 0.18 -1.28 16 14 C -0.07 -1.02 2.93 -89.50 -0.26 -1.28 16 15 C -0.12 -1.54 5.87 -25.03 -0.15 -1.69 16 16 C -0.13 -1.36 6.91 -24.70 -0.17 -1.53 16 17 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 18 C -0.12 -1.33 6.46 -25.61 -0.17 -1.50 16 19 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 20 H 0.06 1.35 5.48 -51.93 -0.28 1.06 16 21 H 0.02 0.43 7.25 -51.93 -0.38 0.06 16 22 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 23 H 0.07 1.14 7.35 -51.92 -0.38 0.76 16 24 H 0.07 1.15 8.02 -51.92 -0.42 0.73 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.02 7.77 -51.93 -0.40 0.62 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.72 7.67 -51.92 -0.40 0.32 16 LS Contribution 272.01 15.07 4.10 4.10 Total: -1.00 -29.25 272.01 -8.34 -37.60 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.62 Total: -1.58 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -0.88 Total: -25.73 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.76 Total: -26.27 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -4.50 Total: 20.27 kcal Atomic # 16 Polarization: -6.16 SS G_CDS: -2.22 Total: -8.37 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.25 -8.34 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062836085.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.054 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds