Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46775 * 2 1 4 4 C 1.50703 * 109.47113 * 239.99996 * 2 1 3 5 5 H 1.07998 * 120.00125 * 239.99564 * 4 2 1 6 6 C 1.37877 * 119.99843 * 60.00431 * 4 2 1 7 7 N 1.31513 * 120.00235 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99876 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47321 * 89.99730 * 8 6 4 10 10 H 1.48505 * 109.46944 * 209.99786 * 8 6 4 11 11 H 1.48502 * 109.46884 * 329.99495 * 8 6 4 12 12 S 1.81402 * 109.46969 * 120.00039 * 2 1 3 13 13 C 1.81395 * 102.99854 * 294.99944 * 12 2 1 14 14 C 1.53006 * 109.47077 * 179.97438 * 13 12 2 15 15 C 1.54262 * 110.03086 * 292.91350 * 14 13 12 16 16 C 1.54974 * 104.15960 * 217.13456 * 15 14 13 17 17 C 1.54898 * 102.77239 * 37.88527 * 16 15 14 18 18 C 1.53869 * 110.03389 * 175.69150 * 14 13 12 19 19 H 1.09002 * 109.47388 * 60.00072 * 1 2 3 20 20 H 1.09001 * 109.47462 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47461 * 300.00266 * 1 2 3 22 22 H 0.96997 * 120.00142 * 180.02562 * 7 6 4 23 23 H 1.09004 * 109.47199 * 60.00672 * 13 12 2 24 24 H 1.09002 * 109.47479 * 300.00063 * 13 12 2 25 25 H 1.09004 * 110.01390 * 54.29793 * 14 13 12 26 26 H 1.09003 * 110.48867 * 335.77607 * 15 14 13 27 27 H 1.08998 * 110.49248 * 98.42672 * 15 14 13 28 28 H 1.09001 * 110.71864 * 279.57770 * 16 15 14 29 29 H 1.08996 * 110.92474 * 156.29612 * 16 15 14 30 30 H 1.09005 * 110.48021 * 203.40884 * 17 16 15 31 31 H 1.09000 * 110.59824 * 80.82384 * 17 16 15 32 32 H 1.08999 * 110.03405 * 238.57176 * 18 14 13 33 33 H 1.09008 * 110.03368 * 359.95329 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4120 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 16 2.1346 -0.8552 1.4811 13 6 1.5664 0.2153 2.8308 14 6 2.0038 -0.3785 4.1714 15 6 1.2585 -1.7040 4.4306 16 6 0.9869 -1.6942 5.9563 17 6 0.6580 -0.2067 6.2360 18 6 1.6227 0.5731 5.3189 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 0.7083 1.1610 -3.4844 23 1 0.4791 0.2881 2.8037 24 1 2.0001 1.2085 2.7141 25 1 3.0804 -0.5496 4.1701 26 1 0.3201 -1.7287 3.8765 27 1 1.8852 -2.5536 4.1594 28 1 1.8746 -2.0039 6.5080 29 1 0.1379 -2.3310 6.2047 30 1 0.8466 0.0355 7.2820 31 1 -0.3774 0.0127 5.9753 32 1 2.5141 0.8632 5.8751 33 1 1.1267 1.4584 4.9208 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062836086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = -37.803974 kcal Electronic energy + Delta-G solvation = -12345.051742 eV Core-core repulsion = 10302.415060 eV Total energy + Delta-G solvation = -2042.636682 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.10817 -33.97045 -31.07675 -30.21955 -28.55566 -25.43385 -24.63781 -21.23405 -20.57958 -19.42230 -16.53885 -15.88162 -15.28907 -14.77233 -14.26985 -13.77870 -13.23135 -13.13029 -12.88931 -12.21808 -11.87180 -11.26178 -11.05123 -10.95146 -10.92042 -10.89317 -10.71532 -10.53956 -10.45421 -10.33083 -10.20934 -9.67951 -9.23702 -8.66411 -8.37055 -6.57920 -6.11596 -4.19303 2.81506 3.27711 3.33607 3.39366 3.97419 4.38109 4.72830 4.77238 4.85645 5.19913 5.38866 5.52662 5.57777 5.73856 5.76609 5.78603 5.92703 5.98124 6.12448 6.21147 6.22834 6.39115 6.48143 6.61898 6.68555 6.85231 6.92047 7.44674 7.69584 7.89102 8.15275 8.80559 9.43836 10.94374 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.070936 B = 0.006306 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.629797 B = 4439.228614 C = 4577.346791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.112 3.888 3 H 0.040 0.960 4 C -0.502 4.502 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.891 5.891 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.272 1.272 12 S -0.315 6.315 13 C -0.078 4.078 14 C -0.073 4.073 15 C -0.114 4.114 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.118 4.118 19 H 0.091 0.909 20 H 0.039 0.961 21 H 0.009 0.991 22 H 0.264 0.736 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 -1.141 13.290 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.015 4.015 3 H 0.058 0.942 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.196 1.196 12 S -0.087 6.087 13 C -0.227 4.227 14 C -0.092 4.092 15 C -0.151 4.151 16 C -0.164 4.164 17 C -0.161 4.161 18 C -0.157 4.157 19 H 0.109 0.891 20 H 0.058 0.942 21 H 0.028 0.972 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.265 -1.959 13.216 13.363 hybrid contribution -0.425 0.830 -0.999 1.366 sum -0.690 -1.129 12.217 12.288 Atomic orbital electron populations 1.22032 0.97021 1.00222 1.00360 1.20744 0.94893 0.96595 0.89288 0.94201 1.20707 1.31797 1.12826 0.88808 0.91661 1.24915 0.94884 0.95001 0.98859 1.69876 1.36429 1.22792 1.23834 0.86385 0.79403 0.79255 0.81807 1.20445 1.21063 1.19648 1.86529 1.77002 1.41186 1.03962 1.23385 1.02836 1.00689 0.95767 1.21526 1.00474 0.94963 0.92284 1.22417 1.00785 0.97086 0.94847 1.22537 1.00830 0.96184 0.96855 1.22346 0.99446 0.95485 0.98845 1.22235 0.99095 0.98349 0.96065 0.89075 0.94231 0.97221 0.92653 0.91041 0.91437 0.90643 0.91133 0.91376 0.91868 0.91917 0.92154 0.91794 0.91958 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.88 37.16 0.33 -3.02 16 2 C 0.11 2.91 2.76 -27.88 -0.08 2.83 16 3 H 0.04 1.11 8.14 -51.92 -0.42 0.69 16 4 C -0.50 -14.11 8.58 -34.44 -0.30 -14.40 16 5 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 S -0.32 -7.01 20.60 -107.50 -2.21 -9.23 16 13 C -0.08 -1.39 4.74 37.16 0.18 -1.21 16 14 C -0.07 -1.06 2.93 -89.50 -0.26 -1.33 16 15 C -0.11 -1.58 5.87 -25.03 -0.15 -1.73 16 16 C -0.13 -1.41 6.91 -24.69 -0.17 -1.58 16 17 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 18 C -0.12 -1.42 6.46 -25.62 -0.17 -1.59 16 19 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 20 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.01 0.20 6.92 -51.93 -0.36 -0.16 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.07 1.27 7.02 -51.92 -0.36 0.90 16 24 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 1.06 7.77 -51.93 -0.40 0.66 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.78 7.67 -51.92 -0.40 0.38 16 LS Contribution 274.93 15.07 4.14 4.14 Total: -1.00 -28.03 274.93 -8.95 -36.98 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.61 Total: -1.87 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -0.88 Total: -21.79 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.63 Total: -24.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -2.21 Total: -9.23 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.03 -8.95 -36.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062836086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.825 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds